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Table 1 Selected DTGs whose transcription was enhanced by increasing the severity of the dehydration treatment

From: The dehydration stress of couch grass is associated with its lipid metabolism, the induction of transporters and the re-programming of development coordinated by ABA

IDa

Log2FCb

Affymetrix annotationd

AGIe

2c

4.5c

8c

HT11N18r_s_at

5.19

5.60

5.77

9-cis-epoxycarotenoid dioxygenase

AT1G78390.1

Contig1718_s_at

4.17

5.16

5.18

dehydrin 9

AT3G50980.1

Contig2406_at

3.75

4.88

5.16

ABA-inducible protein WRAB1

AT3G15670.1

Contig7672_at

3.92

4.78

4.85

protein phosphatase 2C

AT4G31750.1

Contig8184_at

3.97

4.50

4.50

WSI18 protein

AT3G15670.1

HV06O23u_at

3.60

3.95

3.98

mRNA cleavage factor subunit

AT4G29820.1

Contig13161_at

2.88

3.73

3.94

protein phosphatase 2C-like protein

AT1G72770.3

Contig1713_s_at

2.78

3.75

3.80

dehydrin 4

AT5G66400.1

Contig14720_s_at

1.87

3.14

3.74

putative phosphoinositide kinase

AT1G34260.1

HV10J12u_s_at

2.70

3.45

3.71

actin depolymerization factor-like

AT5G59880.1

Contig14870_at

3.46

3.65

3.71

putative trehalose-6-phosphate

AT4G12430.1

Contig2407_s_at

2.42

3.43

3.70

ABA-inducible protein PHV A1

AT3G15670.1

Contig1708_s_at

2.07

3.37

3.60

dehydrin 6

AT4G01985.1

Contig1701_s_at

1.97

3.10

3.47

dehydrin 2

AT3G50980.1

Contig1724_s_at

2.66

3.11

3.40

dehydrin 3

AT5G66400.1

Contig2405_at

2.33

3.22

3.34

group 3 LEA protein

AT3G15670.1

Contig10934_at

2.56

3.09

3.32

Putative abscisic acid-induced protein

AT3G22490.1

Contig8905_at

1.56

3.02

3.31

xylanase inhibitor protein I

 

rbaal10h14_at

1.07

2.27

3.30

abscisic acid-induced protein

 

Contig3807_at

1.78

2.85

3.26

putative nifU-like protein

AT4G22220.1

Contig8220_at

2.49

2.97

3.17

late embryogenesis abundant protein

AT4G21510.1

HVSMEm0008B04r2_s_at

2.28

3.06

3.14

UDP-glucose 4-epimerase

AT4G23920.1

Contig5724_at

1.62

2.50

2.96

4-hydroxyphenylpyruvate dioxygenase

AT1G06570.1

Contig3810_at

1.75

2.89

2.93

WSI76 protein/Galactinol synthase

AT1G09350.1

Contig4942_at

1.46

2.46

2.89

ATP-dependent Clp protease

AT5G51070.1

Contig4955_s_at

2.44

2.82

2.87

putative sugar-starvation induced

AT2G32150.1

Contig26196_at

1.89

2.75

2.86

putative raffinose synthase

 

EBro08_SQ007_B12_s_at

1.32

2.02

2.77

ABA-inducible protein WRAB1

AT3G15670.1

Contig6110_at

1.15

2.36

2.67

Ca2 + −dependent lipid-binding protein

 

Contig4760_s_at

2.10

2.62

2.63

putative late embryogenesis abundant

AT1G01470.1

Contig2924_s_at

1.18

2.28

2.61

aldehyde dehydrogenase homolog Dha1

AT1G54100.2

Contig10022_at

1.33

2.11

2.61

putative glycine-rich cell wall protein

AT5G53870.1

HF18A22r_s_at

1.54

2.34

2.61

Formate dehydrogenase, mitochondrial

AT5G14780.1

  1. aAffymetrix 22 K Barley1 GeneChip Genome Array probe set ID
  2. bLog2 transformed fold change of treated samples against controls
  3. cduration of stress (h)
  4. dMicroarray manufacturer’s annotation of individual IDs
  5. eA. thaliana locus identifier corresponding to individual IDs
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BMC Genomics

ISSN: 1471-2164

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