From: OMGene: mutual improvement of gene models through optimisation of evolutionary conservation
Species Name | Source | Version/Strain | Taxonomy ID | References | |
---|---|---|---|---|---|
Plant species | Arabidopsis thaliana | JGI1 | TAIR10 | 3702 | |
Brassica rapa | JGI | v1.3 | 3711 | [27] | |
Carica papaya | JGI | ASGPBv0.4 | 3649 | ||
Capsella rubella | JGI | v1.0 | 81,985 | ||
Theobroma cacao | JGI | v1.1 | 3641 | ||
Mammalian species | Canis lupus familiaris | NCBI | CanFam3.1/AR105 | 6915 | |
Homo sapiens | CCDS3 | GRCh38.p7/CCDS20 | 9606 | [46] | |
Monodelphis domestica | NCBI | MonDom5 / AR103 | 13,616 | ||
Mus musculus | CCDS | GRCm38.p4/CCDS21 | 10,090 | [46] | |
Oryctolagus cuniculus | NCBI | OryCun2.0/AR102 | 568,996 | ||
Fungal species | Eremothecium gossypii | JG | ATCC10895 | 284,811 | [49] |
Debaryomyces hansenii | JGI | CBS767 | 284,592 | ||
Kluyveromyces lactis | JGI | CLIB210 | 284,590 | [50] | |
Saccharomyces cerevisiae | SGD4 | S288C | 559,292 | [52] | |
Yarrowia lipolytica | JGI | CLIB122 | 284,591 | [50] |