From: Characterization of recombination features and the genetic basis in multiple cattle breeds
SNP | Chr | Pos | Holstein | Jersey | Brown Swiss | Ayrshire | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Male | Female | Male | Female | Male | Female | Male | Female | |||||||||||
Beta | P | Beta | P | Beta | P | Beta | P | Beta | P | Beta | P | Beta | P | Beta | P | |||
ARS-BFGL-NGS-83544 | 1 | 158,140,250 | 0.57 | 1.4 × 10−12 | 0.51 | 5.0 × 10−31 | 0.53 | 0.30 | 0.24 | 0.46 | 0.80 | 6.5 × 10−4 | 0.58 | 5.0 × 10− 3 | 0.75 | 0.05 | 0.37 | 2.0 × 10−3 |
Hapmap58808-rs29017431 | 3 | 52,612,595 | 0.52 | 1.5 × 10−7 | 0.36 | 1.8 × 10−11 | 0.14 | 4.9 × 10−2 | 0.32 | 1.3 × 10−5 | 0.57 | 4.6 × 10−5 | 0.15 | 4.8 × 10−1 | 0.12 | 0.07 | 0.27 | 0.74 |
BovineHD0600030770 | 6 | 109,176,815 | −0.78 | 2.8 × 10−39 | −0.38 | 4.4 × 10− 35 | − 0.64 | 2.1 × 10−11 | − 0.32 | 6.2 × 10− 8 | − 0.73 | 4.3 × 10−5 | − 0.15 | 1.8 × 10− 1 | − 0.67 | 5.0 × 10− 5 | − 0.26 | 2.5 × 10− 1 |
ARS-BFGL-NGS-117763 | 6 | 129,108,015 | 0.92 | 1.3 × 10− 47 | 0.57 | 3.0 × 10− 63 | 0.61 | 1.1 × 10− 11 | 0.47 | 2.1 × 10− 17 | 0.64 | 2.7 × 10−4 | 0.65 | 2.8 × 10− 1 | 0.58 | 5.4 × 10− 3 | 0.49 | 0.85 |
ARS-BFGL-BAC-10975 | 10 | 21,225,382 | − 0.74 | 1.4 × 10− 32 | − 0.42 | 3.8 × 10− 38 | − 0.35 | 1.3 × 10− 3 | − 0.46 | 8.1 × 10− 13 | − 0.30 | 7.6 × 10−2 | − 0.32 | 5.2 × 10− 2 | −0.31 | 0.08 | −0.39 | 0.66 |
BovineHD1000009771 | 10 | 29,619,086 | −0.03 | 0.6 | 0.34 | 4.5 × 10− 11 | −0.17 | 1.3 × 10−2 | 0.31 | 5.1 × 10−6 | 0.03 | 0.85 | 0.83 | 1.4 × 10−2 | −0.09 | 0.87 | 0.39 | 0.06 |
BTA-78285-no-rs | 10 | 86,717,378 | −0.57 | 1.9 × 10−20 | − 0.41 | 8.0 × 10−37 | −0.23 | 1.9 × 10− 2 | − 0.14 | 2.0 × 10− 2 | − 0.48 | 5.8 × 10− 3 | − 0.33 | 9.4 × 10− 2 | − 0.26 | 4.8 × 10− 3 | − 0.37 | 0.56 |
ARS-BFGL-NGS-23945 | 26 | 31,439,013 | −0.15 | 1.6 × 10− 2 | − 0.18 | 2.7 × 10−8 | 0.007 | 0.94 | − 0.18 | 4.2 × 10− 3 | − 0.13 | 0.57 | −0.80 | 0.78 | 0.08 | 0.18 | −0.11 | 0.46 |