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Table 4 Top SNPs associated with genome-wide recombination rate in two sexes and four cattle breeds. The Holstein data have been published previously [15] and are included for comparison purposes

From: Characterization of recombination features and the genetic basis in multiple cattle breeds

SNP Chr Pos Holstein Jersey Brown Swiss Ayrshire
Male Female Male Female Male Female Male Female
Beta P Beta P Beta P Beta P Beta P Beta P Beta P Beta P
ARS-BFGL-NGS-83544 1 158,140,250 0.57 1.4 × 10−12 0.51 5.0 × 10−31 0.53 0.30 0.24 0.46 0.80 6.5 × 10−4 0.58 5.0 × 10− 3 0.75 0.05 0.37 2.0 × 10−3
Hapmap58808-rs29017431 3 52,612,595 0.52 1.5 × 10−7 0.36 1.8 × 10−11 0.14 4.9 × 10−2 0.32 1.3 × 10−5 0.57 4.6 × 10−5 0.15 4.8 × 10−1 0.12 0.07 0.27 0.74
BovineHD0600030770 6 109,176,815 −0.78 2.8 × 10−39 −0.38 4.4 × 10− 35 − 0.64 2.1 × 10−11 − 0.32 6.2 × 10− 8 − 0.73 4.3 × 10−5 − 0.15 1.8 × 10− 1 − 0.67 5.0 × 10− 5 − 0.26 2.5 × 10− 1
ARS-BFGL-NGS-117763 6 129,108,015 0.92 1.3 × 10− 47 0.57 3.0 × 10− 63 0.61 1.1 × 10− 11 0.47 2.1 × 10− 17 0.64 2.7 × 10−4 0.65 2.8 × 10− 1 0.58 5.4 × 10− 3 0.49 0.85
ARS-BFGL-BAC-10975 10 21,225,382 − 0.74 1.4 × 10− 32 − 0.42 3.8 × 10− 38 − 0.35 1.3 × 10− 3 − 0.46 8.1 × 10− 13 − 0.30 7.6 × 10−2 − 0.32 5.2 × 10− 2 −0.31 0.08 −0.39 0.66
BovineHD1000009771 10 29,619,086 −0.03 0.6 0.34 4.5 × 10− 11 −0.17 1.3 × 10−2 0.31 5.1 × 10−6 0.03 0.85 0.83 1.4 × 10−2 −0.09 0.87 0.39 0.06
BTA-78285-no-rs 10 86,717,378 −0.57 1.9 × 10−20 − 0.41 8.0 × 10−37 −0.23 1.9 × 10− 2 − 0.14 2.0 × 10− 2 − 0.48 5.8 × 10− 3 − 0.33 9.4 × 10− 2 − 0.26 4.8 × 10− 3 − 0.37 0.56
ARS-BFGL-NGS-23945 26 31,439,013 −0.15 1.6 × 10− 2 − 0.18 2.7 × 10−8 0.007 0.94 − 0.18 4.2 × 10− 3 − 0.13 0.57 −0.80 0.78 0.08 0.18 −0.11 0.46