Skip to main content

Table 4 Top SNPs associated with genome-wide recombination rate in two sexes and four cattle breeds. The Holstein data have been published previously [15] and are included for comparison purposes

From: Characterization of recombination features and the genetic basis in multiple cattle breeds

SNP

Chr

Pos

Holstein

Jersey

Brown Swiss

Ayrshire

Male

Female

Male

Female

Male

Female

Male

Female

Beta

P

Beta

P

Beta

P

Beta

P

Beta

P

Beta

P

Beta

P

Beta

P

ARS-BFGL-NGS-83544

1

158,140,250

0.57

1.4 × 10−12

0.51

5.0 × 10−31

0.53

0.30

0.24

0.46

0.80

6.5 × 10−4

0.58

5.0 × 10− 3

0.75

0.05

0.37

2.0 × 10−3

Hapmap58808-rs29017431

3

52,612,595

0.52

1.5 × 10−7

0.36

1.8 × 10−11

0.14

4.9 × 10−2

0.32

1.3 × 10−5

0.57

4.6 × 10−5

0.15

4.8 × 10−1

0.12

0.07

0.27

0.74

BovineHD0600030770

6

109,176,815

−0.78

2.8 × 10−39

−0.38

4.4 × 10− 35

− 0.64

2.1 × 10−11

− 0.32

6.2 × 10− 8

− 0.73

4.3 × 10−5

− 0.15

1.8 × 10− 1

− 0.67

5.0 × 10− 5

− 0.26

2.5 × 10− 1

ARS-BFGL-NGS-117763

6

129,108,015

0.92

1.3 × 10− 47

0.57

3.0 × 10− 63

0.61

1.1 × 10− 11

0.47

2.1 × 10− 17

0.64

2.7 × 10−4

0.65

2.8 × 10− 1

0.58

5.4 × 10− 3

0.49

0.85

ARS-BFGL-BAC-10975

10

21,225,382

− 0.74

1.4 × 10− 32

− 0.42

3.8 × 10− 38

− 0.35

1.3 × 10− 3

− 0.46

8.1 × 10− 13

− 0.30

7.6 × 10−2

− 0.32

5.2 × 10− 2

−0.31

0.08

−0.39

0.66

BovineHD1000009771

10

29,619,086

−0.03

0.6

0.34

4.5 × 10− 11

−0.17

1.3 × 10−2

0.31

5.1 × 10−6

0.03

0.85

0.83

1.4 × 10−2

−0.09

0.87

0.39

0.06

BTA-78285-no-rs

10

86,717,378

−0.57

1.9 × 10−20

− 0.41

8.0 × 10−37

−0.23

1.9 × 10− 2

− 0.14

2.0 × 10− 2

− 0.48

5.8 × 10− 3

− 0.33

9.4 × 10− 2

− 0.26

4.8 × 10− 3

− 0.37

0.56

ARS-BFGL-NGS-23945

26

31,439,013

−0.15

1.6 × 10− 2

− 0.18

2.7 × 10−8

0.007

0.94

− 0.18

4.2 × 10− 3

− 0.13

0.57

−0.80

0.78

0.08

0.18

−0.11

0.46