Table 5 The most reliable top ten significantly enriched pathways of DEGs under low temperature treatments
| Â | Pathway ID | Pathway | DEGs in pathway | All genes in pathway | P-value |
|---|---|---|---|---|---|
CP1 | ko03008 | Ribosome biogenesis in eukaryotes | 47 | 137 | 5.59E-13 |
ko00196 | Photosynthesis - antenna proteins | 20 | 64 | 3.19E-09 | |
ko00940 | Phenylpropanoid biosynthesis | 38 | 233 | 2.53E-07 | |
ko00500 | Starch and sucrose metabolism | 42 | 301 | 4.29E-06 | |
ko00052 | Galactose metabolism | 17 | 104 | 0.0005392 | |
ko00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | 13 | 78 | 0.0019789 | |
ko00906 | Carotenoid biosynthesis | 8 | 38 | 0.0032878 | |
ko00130 | Ubiquinone and other terpenoid-quinone biosynthesis | 10 | 66 | 0.0123906 | |
ko00603 | Glycosphingolipid biosynthesis - globo series | 3 | 8 | 0.0132652 | |
ko00360 | Phenylalanine metabolism | 17 | 143 | 0.0156871 | |
CP2 | ko03008 | Ribosome biogenesis in eukaryotes | 31 | 137 | 4.55E-09 |
ko00196 | Photosynthesis - antenna proteins | 20 | 64 | 7.76E-09 | |
ko04626 | Plant-pathogen interaction | 45 | 272 | 5.72E-08 | |
ko00940 | Phenylpropanoid biosynthesis | 29 | 233 | 0.0020767 | |
ko00564 | Glycerophospholipid metabolism | 20 | 149 | 0.0042047 | |
ko00360 | Phenylalanine metabolism | 19 | 143 | 0.0058143 | |
ko00052 | Galactose metabolism | 15 | 104 | 0.0064176 | |
ko00500 | Starch and sucrose metabolism | 33 | 301 | 0.0079662 | |
ko04075 | Plant hormone signal transduction | 38 | 360 | 0.0084879 | |
ko00740 | Riboflavin metabolism | 3 | 8 | 0.0152681 | |
CP3 | ko00196 | Photosynthesis - antenna proteins | 28 | 64 | 0 |
ko04626 | Plant-pathogen interaction | 33 | 272 | 5.61E-06 | |
ko04075 | Plant hormone signal transduction | 39 | 360 | 1.24E-05 | |
ko00860 | Porphyrin and chlorophyll metabolism | 14 | 77 | 4.17E-05 | |
ko04712 | Circadian rhythm - plant | 11 | 55 | 0.0001138 | |
ko00906 | Carotenoid biosynthesis | 8 | 38 | 0.0006843 | |
ko00195 | Photosynthesis | 15 | 114 | 0.0009170 | |
ko00740 | Riboflavin metabolism | 3 | 8 | 0.0067278 | |
ko00591 | Linoleic acid metabolism | 6 | 36 | 0.0106150 | |
ko00564 | Glycerophospholipid metabolism | 14 | 149 | 0.0256548 |