Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts

Elliott, Marianne; Yuzon, Jennifer; C, Mathu Malar; Tripathy, Sucheta; Bui, Mai; Chastagner, Gary A.; Coats, Katie; Rizzo, David M.; Garbelotto, Matteo; Kasuga, Takao

doi:10.1186/s12864-018-4709-7

Table 1 Isolates used in this study

From: Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts

Isolate numbers	Source^a	Year	State	SSR multilocus genotype	Colony phenotype	Contact
Washington State University Collection (WA 2017)
WSU106–0009	Stream bait	2006	WA	NA1-D02	nwt	M. Elliott & G. Chastagner
WSU106–0019 ^b	Phoradendron serotinum subsp. macrophyllum	2006	WA	NA1-D06	wt	M. Elliott & G. Chastagner
WSU107–0016	Soil bait	2007	WA	NA1-D01	wt	M. Elliott & G. Chastagner
WSU107–0019	Rhododendron sp.	2007	WA	NA1-A21	nwt	M. Elliott & G. Chastagner
WSU107–0042	Rhododendron sp.	2007	WA	NA1-A21	nwt	M. Elliott & G. Chastagner
WSU107–0043	Rhododendron sp.	2007	WA	NA1-A21	nwt	M. Elliott & G. Chastagner
WSU107–0054	Rhododendron sp.	2007	WA	NA1-A03	wt	M. Elliott & G. Chastagner
WSU107–0057 ^b	Rhododendron sp.	2007	WA	NA1-A03	wt	M. Elliott & G. Chastagner
WSU107–0066	Rhododendron sp.	2007	WA	NA1-D01	wt	M. Elliott & G. Chastagner
WSU107–0072 ^b	Rhododendron sp.	2007	WA	NA1-A05	nwt	M. Elliott & G. Chastagner
WSU107–0073	Rhododendron sp.	2007	WA	NA1-A05	wt	M. Elliott & G. Chastagner
WSU107–0081 ^b	Arbutus unedo	2007	WA	NA1-A25	wt	M. Elliott & G. Chastagner
WSU107–0086 ^b	Rhododendron sp.	2007	WA	NA1-A03	wt	M. Elliott & G. Chastagner
WSU107–0093	Rhododendron sp.	2007	WA	NA1-D02	wt	M. Elliott & G. Chastagner
WSU107–0094	Rhododendron sp.	2007	WA	NA1-A03	nwt	M. Elliott & G. Chastagner
WSU107–0095	Rhododendron sp.	2007	WA	NA1-A10	wt	M. Elliott & G. Chastagner
WSU107–0096	Rhododendron sp.	2007	WA	NA1-A10	wt	M. Elliott & G. Chastagner
WSU107–0100	Rhododendron sp.	2007	WA	NA1-A29	wt	M. Elliott & G. Chastagner
WSU108–0003	Stream bait	2008	WA	NA1-A28	wt	M. Elliott & G. Chastagner
WSU108–0006	Viburnum tinus	2008	WA	NA1-A17	wt	M. Elliott & G. Chastagner
WSU108–0021 ^b	Viburnum tinus	2008	WA	NA1-A02	wt	M. Elliott & G. Chastagner
WSU108–0022	Viburnum tinus	2008	WA	NA1-A02	wt	M. Elliott & G. Chastagner
WSU108–0024	Viburnum tinus	2008	WA	NA1-A02	wt	M. Elliott & G. Chastagner
WSU108–0025	Viburnum tinus	2008	WA	NA1-A02	wt	M. Elliott & G. Chastagner
WSU111–0001 ^b	Stream bait	2011	WA	NA1-A29	wt	M. Elliott & G. Chastagner
WSU111–0002	Stream bait	2011	WA	NA1-A05	wt	M. Elliott & G. Chastagner
WSU115–0077	Rhododendron sp.	2015	WA	NA1-A13	nwt	M. Elliott & G. Chastagner
WSU115–0089	Soil bait	2015	WA	NA1-A17	wt, scenes	M. Elliott & G. Chastagner
WSU115–0095	Soil bait	2015	WA	NA1-A30	wt	M. Elliott & G. Chastagner
WSU115–0118 ^b	Rhododendron sp.	2015	WA	NA1-A13	nwt, scenes	M. Elliott & G. Chastagner
UC Davis Collection (CA 2017)
BS2014–584	Notholithocarpus densiflorus	2014	CA		nwt	D. Rizzo
BS96	Umbellularia californica	2004	CA		nwt	D. Huberli
Pr-106 ^b	Umbellularia californica	2001	CA		wt	D. Rizzo
Pr-218	Rhamnus cathartica	2002	CA		wt	D. Rizzo
Pr-438	Arbutus menziesii	2006	CA		wt	D. Rizzo
Pr-451	Sequoia sempervirens	2004	CA		wt	D. Rizzo
Pr-455	Osmorhiza berteroi	2005	CA		nwt	D. Rizzo
Pr-458	Adiantum jordanii	2005	CA		wt	D. Rizzo
Pr-467	Corylus cornuta	2006	CA		wt	D. Rizzo
Pr-472	Choisya ternata	2006	CA		nwt	D. Rizzo
Pr-486	Camellia sp.	2006	CA		nwt	D. Rizzo
Pr-1537	Abies grandis	2012	CA		wt	D. Rizzo
Pr-1652	Stream bait	2014	CA		wt	D. Rizzo
9D1	(Re) Pr-1556 from Q. agrifolia log	2012	CA		wt	T. Kasuga
California Department of Food and Agriculture (CDFA) Collection (CA 2017)
CDFA1418886; ND886 ^b, ^c	Camellia sp.	2004	CA	NA1-B20	wt	S. Latham & C. Blomquist
CDFA1644994–2	Camellia sp.	2011	CA		wt	S. Latham & C. Blomquist
UC Davis Collection, genome analysis published (Kasuga et al. [12]) (CA 2016)
Pr-16	Quercus agrifolia	2000	CA		nwt	D. Rizzo
Pr-102 ^b	Quercus agrifolia	2001	CA		nwt	D. Rizzo
Pr-745	Rain water near infected U. californica	2010	CA		wt	Phytosphere Research
Pr-745#3	(Re) Pr-745 from Q. chrysolepis	2011	CA		nwt	K. Aram
Pr-745#4	(Re) Pr-745 from Q. chrysolepis	2011	CA		nwt	K. Aram
Pr-1556	Umbellularia californica	2011	CA		wt	T. Kasuga
Pr-1556#7#1	(Re) Pr-1556 from Q. chrysolepis & race tube	2013	CA		nwt	T. Kasuga
Pr-140.7	Quercus parvula var. shrevei	2014	CA		nwt	Phytosphere Research
Pr-140.9	Quercus parvula var. shrevei	2014	CA		wt	Phytosphere Research
MK516a	Quercus agrifolia	2008	CA		nwt	M. Garbelotto

^a (Re) indicates re-isolates. These isolates were artificially inoculated and recovered from indicated hosts
^b Isolates that have been both sequenced and phenotyped
^c CDFA1418886 is abbreviated to ND886 in this report

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ISSN: 1471-2164

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