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Table 2 False positive and false negative values of SWGIS v2.0 calculated for different non-naïve chromosomes

From: EuGI: a novel resource for studying genomic islands to facilitate horizontal gene transfer detection in eukaryotes

 

False positive a

False negative

Fungi

 A. fumigatus NC_007194

18%

30.93%

 F. oxysporum CM000593

16%

34.54%

 S. cerevisisae BK006941

2%

11.34%

 C. neoformans NC_026749

7%

42.78%

Protozoa

 T. parva NC_007344

25%

7.22%

 P. falciparum NC_004329

22%

5.67%

Invertebrates

 D. melanogaster NC_004353

49%

13.40%

 C. elegans NC_003279

6%

9.28%

  1. aRandom chromosome fragments were moved from the successive chromosome of the one listed in the table (e.g. for A. fumigatus random fragments were moved from NC_007195 to NC_007194, and similarly for the other organisms listed in column one)