Landscape of copy number variations in Bos taurus: individual – and inter-breed variability

BMC Genomics

Table 4 The most common breed specific deletions

breed	# bulls sharing deletion	BTA	begin	end	genomic location	overlapping with the DGVa
BSW	23	5	23,616,701	23,623,400	intergenic
FLV	5	12	76,499,501	76,514,300	intergenic	[25] (11)
FLV	5	16	23,946,401	23,947,000	intergenic
FLV	5	18	63,804,801	63,808,200	upstream gene variant of ENSBTAG00000000688
FLV	5	28	7,026,301	7,027,000	intron of the ENSBTAG00000020361 (SLC35F3) gene
GUE	10	2	55,348,801	55,371,300	intergenic
RED	11	17	25,081,301	25,083,200	intergenic
SIM	5	18	63,800,101	63,806,400	start lost, coding sequence, 5’ UTR, intron of the ENSBTAG00000000688 gene	[12] (1)

The list of the most common deletions detected within each breed. Genomic locations were determined by the VEP program. The last column shows the number of deletions found in other studies available under the DGVa database

ISSN: 1471-2164