Table 2 Numbers of Y-chromosome bases, Y-SNPs and haplogroups retrieved
From: In-solution Y-chromosome capture-enrichment on ancient DNA libraries
Sample | Condition | Positions recovered | Total SNPs | Ancestral SNPs | Derived SNPs | Haplogroup retrieved |
|---|---|---|---|---|---|---|
STM1 | All | 2,205,331 | 12,061 | 11,625 | 436 | R1b-M343 |
Pre-capture | 93,725 | 595 | 577 | 18 | R1b-M343 | |
YCC | 1,372,731 | 8103 | 7805 | 298 | R1b-M343 | |
WGC | 354,255 | 2414 | 2321 | 93 | R1b-M343 | |
WGC + YCC | 493,085 | 2971 | 2871 | 100 | R1b-M343 | |
STM2 | All | 428,846 | 2183 | 2091 | 92 | E1b1a1a1-M80 |
Pre-capture | 19,994 | 109 | 100 | 9 | E1b1a1a1-M80 | |
YCC | 220,732 | 1262 | 1215 | 47 | E1b1a1-M2 | |
WGC | 109,411 | 760 | 726 | 34 | E1b1a1a1-M80 | |
WGC + YCC | 219,152 | 114 | 110 | 4 | CT-M168 | |
PI174 | All | 3224 | 19 | 18 | 1 | A1-V168 |
Pre-capture | 129 | 0 | 0 | 0 | – | |
YCC | 1993 | 12 | 11 | 1 | A1-V168 | |
WGC | 147 | 2 | 2 | 0 | A1-V168 | |
WGC + YCC | 1818 | 11 | 10 | 1 | A1-V168 | |
PI383 | All | 7738 | 46 | 45 | 1 | P-M45 |
Pre-capture | 146 | 0 | 0 | 0 | – | |
YCC | 1809 | 13 | 12 | 1 | P-M45 | |
WGC | 473 | 5 | 5 | 0 | P-M45 | |
WGC + YCC | 6890 | 42 | 41 | 1 | P-M45 | |
PI435 | All | 16,469 | 100 | 97 | 3 | BT-M42 |
Pre-capture | 164 | 0 | 0 | 0 | – | |
YCC | 1918 | 15 | 15 | 0 | BT-M42 | |
WGC | 2632 | 18 | 18 | 0 | – | |
WGC + YCC | 12,399 | 86 | 83 | 3 | BT-M42 | |
PI437 | All | 3444 | 14 | 14 | 0 | – |
Pre-capture | 103 | 0 | 0 | 0 | – | |
YCC | 938 | 6 | 6 | 0 | – | |
WGC | 296 | 0 | 0 | 0 | – | |
WGC + YCC | 2320 | 11 | 11 | 0 | – |