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Table 1 Metrics for de novo assembly transcriptomes

From: Functional insights into the infective larval stage of Anisakis simplex s.s., Anisakis pegreffii and their hybrids based on gene expression patterns

Summary

A. simplex s.s

A. pegreffii

Hybrid

Merged

Total transcriptome size

88,007,524

68,071,234

50,568,936

67,459,080

Unigenes (Loci)

36,645

31,988

29,656

-NA-

Transcripts (isoforms)

121,907

91,541

76,848

75,380

Longest transcript (bp)

10,774

11,724

10,798

16,240

shortest transcript (bp)

100

100

100

107

% transcripts >1Kb

20.3%

21.7%

17.9%

28.7%

N50 (bp)

973

1026

885

1276

L50 (bp)

25,878

19,118

16,598

15,385

%A

30.87%

30.25%

30.11%

30.41%

%C

19.60%

20.03%

20.36%

18.64%

%G

19.64%

19.98%

20.49%

20.60%

%T

29.89%

29.74%

29.04%

29.87%

%Ns

0%

0%

0%

0%