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Fig. 4 | BMC Genomics

Fig. 4

From: Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer

Fig. 4

COG functional categories from the core genome of S. lugdunensis, S. aureus, and S. epidermidis strains. Gene lists were predicted using the EDGAR web server, and COG categories obtained by loading them into the WebMGA web server. COG categories are as follows: for cellular processes and signaling, d is cell cycle control, cell division, and chromosome partitioning; m is cell wall/membrane/envelope biogenesis; n is cell motility; o is post-translational modification, protein turnover, and chaperones; t is signal transduction mechanisms; u is intracellular trafficking, secretion, and vesicular transport; v is defense mechanisms; and z is cytoskeleton. For information storage and processing, b is chromatin structure and dynamics; j is translation, ribosomal structure, and biogenesis; k is transcription; and l is replication, recombination, and repair. For metabolism, c is energy production and conversion; e is amino acid transport and metabolism; f is nucleotide transport and metabolism; g is carbohydrate transport and metabolism; h is coenzyme transport and metabolism; i is lipid transport and metabolism; p is inorganic ion transport and metabolism; and q is secondary metabolite biosynthesis, transport, and catabolism. r is for general function prediction only, and s for unknown function

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