The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination

Table 2 Recombination frequency of the mitochondrial genome of Nymphaea colorata related to ten repeat pairs

Repeat	Length (bp)	Identity (%)	Direction	Position	Reads support master circle conformation	Reads support alternative conformation
R1	3293	100.00	+	153,171–156,463	539 (91.82%)	48 (8.18%)
R1	3293	100.00	–	355,403–352,111	539 (91.82%)	48 (8.18%)
R2	128	82.81	+	414,017–414,144	1000 (98.72%)	13 (1.28%)
R2	128	82.81	–	414,144–414,017	1000 (98.72%)	13 (1.28%)
R3	462	100.00	+	187,030–187,491	874 (99.66%)	3 (0.34%)
R3	462	100.00	+	307,094–307,555	874 (99.66%)	3 (0.34%)
R4	1538	97.33	+	386,370–387,906	822 (99.76%)	2 (0.24%)
R4	1538	97.33	–	389,671–388,149	822 (99.76%)	2 (0.24%)
R5	508	81.50	+	15,484–15,960	960 (99.79%)	2 (0.21%)
R5	508	81.50	–	388,795–388,149	960 (99.79%)	2 (0.21%)
R6	399	99.75	+	39,755–40,153	880 (99.77%)	2 (0.23%)
R6	399	99.75	+	466,916–467,314	880 (99.77%)	2 (0.23%)
R7	945	98.41	+	301,710–302,649	915 (99.89%)	1 (0.11%)
R7	945	98.41	+	357,890–358,834	915 (99.89%)	1 (0.11%)
R8	729	99.86	+	313,110–313,838	932 (99.89%)	1 (0.11%)
R8	729	99.86	–	315,533–314,805	932 (99.89%)	1 (0.11%)
R9	692	99.86	+	80,337–81,028	783 (99.87%)	1 (0.13%)
R9	692	99.86	–	309,412–308,722	783 (99.87%)	1 (0.13%)
R10	72	97.22	+	302,169–302,240	1362 (99.93%)	1 (0.07%)
R10	72	97.22	+	313,560–313,631	1362 (99.93%)	1 (0.07%)

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