Genomic regions underlying uniformity of yearling weight in Nellore cattle evaluated under different response variables

Table 3 Overlapped 1-Mb windows between response variables for uniformity (dEBV_v, dEBV_{v_r0} and ln_\( {\upsigma}_{\widehat{\mathrm{e}}}^2 \))

Windows^a	Shared by			% Variance Explained^b (BF^c)			Candidate Genes^d
Windows^a	dEBV_v	dEBV_{v_r0}	ln_\( {\upsigma}_{\widehat{\mathrm{e}}}^2 \)	dEBV_v	dEBV_{v_r0}	ln_\( {\upsigma}_{\widehat{\mathrm{e}}}^2 \)	Candidate Genes^d
Chr12_5	X	X		1.69 (23.48)	0.19 (1.99)		–
Chr22_52	X		X	1.73 (33.97)		0.72 (18.37)	UBA7, IP6K1, GMPPB, RNF123, MST1, APEH, AMT, RHOA, USP4, USP19, IMPDH2, NDUFAF3, SLC25A20, PRKAR2A, IP6K2, UQCRC1, UCN2, PFKFB4, SHISA5
Chr6_105		X	X		0.29 (2.94)	0.91 (12.74)	NUDT9, SPARCL1, DSPP, DMP1, MAN2B2, PPP2R2C, JAKMIP1
Chr9_8		X	X		0.28 (3.05)	0.67 (13.08)	ADGRB3

dEBV_v: deregressed EBV for residual variance of yearling weight; dEBV_{v_r0} and ln_\( {\upsigma}_{\widehat{\mathrm{e}}}^2 \): deregressed EBV for residual variance and log-transformed variance of estimated residuals, respectively, both assuming null genetic correlation between mean and residual variance
^a Represented by chromosome (Chr) and physical position (in Mb) (i.e. Chr_Mb)
^b Proportion of genetic variance in each 1-Mb window
^c Single nucleotide polymorphism (SNP) with the highest Bayes Factor (BF) within each 1-Mb window
^d Ensembl Database UMD3.1. See the complete gene list in each window in Additional file 1

ISSN: 1471-2164