Fig. 2

Summarised statistics for the longest isoforms per gene for preliminary assemblies. Left – Pinus tecunumanii (LE) assemblies (Pnte). Right – Pinus patula assemblies (Pipt). a Size, length, predicted open reading frame (ORF) content and longest transcript per assembly statistics. b N50, mean length and %GC. The grey, dashed, secondary y-axes only applies to the dashed grey lines. The x-axes represent respective assemblies. In each case the first four assemblies were produced using the full dataset and the remaining 16 with the normalised dataset. Numbers in assembly identities (25 & 31) represent the k-mer size used, ‘c’ indicates usage of CuffFly transcript reconstruction algorithm, ‘g’ indicates genome guided assemblies, ‘n’ indicates usage of the normalised dataset, ‘HS’ and ‘LS’ indicate usage of high- and low-stringency parameters respectively