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Table 1 Representative genomes used in comparative study

From: Complete genome of streamlined marine actinobacterium Pontimonas salivibrio strain CL-TW6T adapted to coastal planktonic lifestyle

Strain

Taxonomya

Accession number

Genome size (Mb)

Ecological niche

Reference

Pontimonas

salivibrio

CL-TW6T

Micrococcales

Microbacteriaceae

CP026923

1.76b

coastal waters

planktonic

This study [1]

acMicro-4c

Micrococcales

family unspecified

JNSD01000000

1.21b

freshwater

planktonic

[15]

Microcella

alkaliphila

JAM AC0309

Micrococcales

Microbacteriaceae

AP017315

2.70

deep sea sedimentd

[91]

Yonghaparkia

sp. Root332

Micrococcales

Microbacteriaceae

NZ_LMCX00000000

> 1.6

Plant root/ground water

[92]

Clavibacter

michiganensis

nebraskensis

NCPPB 2581

Micrococcales

Microbacteriaceae

NC_020891

3.06

plant

pathogen

unpublished

See [93]

Leifsonia xyli cynodontis

DSM 46306

Micrococcales

Microbacteriaceae

NC_022438

2.68

plant

pathogen

[94]

Microbacterium

testaceum

StLB037

Micrococcineae

Microbacteriaceae

NC_015125

3.98

endophytic

[95]

Rathayibacter

toxicus

70137

Micrococcales

Microbacteriaceae

NZ_CP010848

2.33

plant

pathogen

unpublished

See [96]

Rhodoluna lacicola MWH-Ta8

Micrococcales

Microbacteriaceae

CP007490

1.43b

freshwater

planktonic

[97]

Mycobacterium

tuberculosis

H37Rv

Corynebacterineae

Mycobacteriaceae

NC_000962

4.41

human pathogen

[14]

Corynebacterium

glutamicum

WM001

Corynebacteriales

Corynebacteriaceae

NZ_CP022394

3.31

soil, water

unpublished

See [98]

Streptomyces

cattleya

DSM 46488

Actinomycetales

Streptomycineae

NC_017586

NC_017585

6.28

1.81

soil, decaying

vegetation

unpublished

See [99]

MedAcidi-G1b

Acidimicrobiales

JUEM00000000

1.85-2

Mediterranean sea

chlorophyll max.

[10]

Prochlorococcus marinus MD4

Cyanobacteria

NC_005072

1.66b

ocean, oligotrophic zone

[100]

Pelagibacter ubique HTCC1062

Alpha Proteobacteria

NC_007205

1.31b

ocean, oligotrophic zone

[8]

  1. aArranged in order of increasing phylogenetic distance
  2. bConsidered streamlined
  3. cFor metagnomic assemblies, only the assembly with the most similar genes to P. salivibrio was considered
  4. dAlthough other members of Microcella alkaliphila have been found in fresh water [101]