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Table 1 Datasets applied in this study

From: Genome-scale MicroRNA target prediction through clustering with Dirichlet process mixture model

Datasets

Content

CLASH data [7]

17,436 interactions on Human kidney cell (HEK293), associated with Ago1

iPAR-CLIP data [8]

10,566 interactions on HEK293, human embryonic stem cell, EBV-infected lymphoblastoid cell lines, and primary effusion lymphoma cell line, associated with Ago1 and Ago2

CLEAR-CLIP data [30]

32,711 interactions on Human hepatoma cell, associated with Ago

mirTarbase [20]

11,002 interactions on Human genome, predicted by miRanda;

483 validated interactions by non-sequencing analysis

RefSeq [42]

56,000 human transcripts