Table 1 Genomic regions identified by genome-wide association analysis of resistance to clinical mastitis in Nordic Holstein cattle
BTA | Base position | Effect | –log10(p) | Region*** | Gene | Annotation |
|---|---|---|---|---|---|---|
3 | 92,927,352 | −1.34 | 8.88 | 91,961,838~ 93,178,041 | ENSBTAG00000010814 (28,361 bp) | intergenic |
4 | 10,928,348 | −2.39 | 11.48 | 10,113,846 ~  11,178,507 | TFPI2 (107,131 bp) | intergenic |
4 | 58490979* | 1.44 | 9.44 | 57,757,451 ~  58,741,047 | ENSBTAG00000020620 (233,286 bp) | intergenic |
5 | 30,211,323 | −1.54 | 11.71 | 29,850,270 ~  30,461,626 | BCDIN3 (599 bp) | upstream |
5 | 106371995* | − 1.52 | 9.23 | 105,444,242 ~  106,622,012 | CCND2 (95,176 bp) | intergenic |
6 | 88,729,872 | 2.78 | 38.97 | 88,479,895 ~  88,980,376 | GC | intron |
6 | 23469606* | 1.63 | 12.53 | 23,219,637 ~  23,719,758 | MANBA | intron |
6 | 93131207** | 2.05 | 12.63 | 92,131,530 ~  93,382,644 | CCDC158 (72,869 bp) | intergenic |
7 | 57,794,761 | 1.36 | 9.32 | 57,545,197 ~  58,044,816 | ENSBTAG00000019739 (33,697) | intergenic |
8 | 25,684,799 | 1.83 | 11.98 | 25,434,812 ~  25,935,079 | ADAMTSL1 | intron |
9 | 80,007,099 | −1.45 | 10.02 | 79,238,565 ~  80,257,157 | NMBR (604,558 bp) | intergenic |
10 | 51,191,670 | −1.63 | 9.90 | 50,733,332 ~  51,441,800 | MYO1E | intron |
11 | 88,742,878 | 1.47 | 9.43 | 88,150,188 ~  88,993,125 | ID2 | intergenic |
13 | 62,017,506 | −1.95 | 19.82 | 61,295,534 ~  62,267,717 | PDRG1 (2545 bp) | upstream |
14 | 61,344,981 | 1.76 | 8.88 | 61,020,081 ~  61,594,984 | ZFPM2 | intron |
16 | 47,836,093 | −1.88 | 12.77 | 47,048,599 ~  48,086,099 | ACOT7 | intron |
18 | 43,909,571 | 2.38 | 17.52 | 43,659,734 ~  44,159,716 | ENSBTAG00000004994 (17,651 bp) | intergenic |
19 | 43,038,655 | −1.73 | 14.95 | 42,148,461 ~  43,288,858 | STAT5A | intron |
20 | 38,471,456 | −2.88 | 20.57 | 38,221,493 ~  38,721,830 | SPEF2 | intron |
23 | 11,477,905 | 1.53 | 13.58 | 11,204,757 ~  11,727,945 | MDGA1 (52,973 bp) | intergenic |
25 | 35,354,412 | 1.46 | 9.47 | 35,104,498 ~  35,604,430 | CUX1 | intron |
26 | 20,463,679 | 1.41 | 9.44 | 20,214,011 ~  20,713,741 | SLC25A28 (2425 bp) | downstream |