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Table 2 Trinity assembly summary statistics of de novo reference transcriptome for limb regeneration in a non-model terrestrial salamander, Bolitoglossa ramosi (Caudata: Plethodontidae)

From: Using transcriptomics to enable a plethodontid salamander (Bolitoglossa ramosi) for limb regeneration research

Parameter

Number

Total aligned reads

1,641,919,128

Total number of high quality assembled paired-end reads

654,673,506

Total trinity transcripts

577,037

Total trinity ‘genes’

433,809

Average ‘genes’ length (pb)

569

%GC

43,59

Longest contig (bp)

20,709

Shortest contig

224

Number of contigs > 200 bp

390,662

Number of contigs > 1 Kb

40,133

Number of contigs > 5 Kb

2797

Number of contigs > 10 Kb

217

Number of predict ORFs (transdecoder)

83,764