Table 4 List of known genes or QTLs related to the traits within 0.36 Mb distance interval
From: Genome-wide association study of agronomic traits in rice cultivated in temperate regions
SNP | QTL / gene | QTL/gene name | locus | chr | position | reference |
|---|---|---|---|---|---|---|
H-1 | DEP2 | cleistogamy gene | Os07g0616000 | 7 | 26,041,969–26,049,689 | [16] |
DH-3 | qPSP-6 | photoperiod sensitive phase 6 | – | 6 | 6,720,901–8,066,362 | Cai et al. 1998 |
DH-4 | qDTH-6 | – | – | 6 | 8,054,255–8,066,362 | Fujino et al. 2005 |
DH-4 | Su-Se-1(t) | – | 6 | 8,054,255–8,066,362 | [40] | |
PL-6 | rip-3 | rice panicle 3 (α-tubulin) | Os03g0726100 | 3 | 30,288,045–30,290,829 | [27] |
PL-8 | sdg / gid1 | semidwarf gene g / gibberellin insensitive dwarf1 | Os05g0407500 | 5 | 19,875,232–19,878,096 | [31]; Zhang et al. 2012 |
PL-13 | LGD1 | Lagging Growth and Development 1 | Os09g0502100 | 9 | 20,078,670–20,084,674 | [30] |
PL-14 | qssd10 | spikelet setting density 10 | – | 10 | 12,044,545–19,623,828 | [33] |
GN-3, GN-4 | LRK1 | leucine-rich repeat receptor-like kinase1 | Os02g0154200 | 2 | 2,978,853–2,982,354 | Za et al. 2009 |