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Table 3 The expression of common stress-responsive maize genes and their rice orthologs in plant roots exposed to Cd treatment

From: Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs

Categories

Maize

  

Rice

 

Plant Orthologous Groups

Gene ID

Log2FC

maize Annotation

Gene ID

log2FC

rice Annotation

ORTHOMCL

Abiotic stress

 ZM2G085086

2.4

ZmHIPP27, HMAD isoprenylated protein

Os04g17100

3.6

heavy metal-associated domain (HMAD) OsHIPP42

MCL4978

 ZM2G099003

2.6

Lea5-D-like

Os01g21250

2.3

LEA, late embryogenesis abundant protein

MCL16656

 ZM2G012631

0.9

HSP90–2

Os08g39140

1.5

heat shock protein

MCL313

 ZM2G032766

2.7

CaLB domain protein

Os08g44850

1.2

C2 domain containing protein

MCL5451

Transcription factors

 ZM2G347043

3.4

NAC49; ZmSNAC1

Os03g60080

3.4

SNAC1, stress-responsive NAC 1

MCL15794

 ZM2G069146

4.2

dehydration-responsive element-binding protein

Os09g35030

3.5

OsDREB1A

MCL12934

 ZM2G061487

2.3

DRE binding factor 1

Os08g31580

1.4

ERF, ethylene-responsive transcription factor

MCL17488

 ZM2G174347

1.4

ERF

Os05g41780

1.0

AP2 domain containing protein

MCL5811

 ZM2G068967

1.9

ERF

Os04g52090

1.4

OsAP2–39

MCL12147

 ZM2G438202

2.0

ERF

   

MCL12147

 ZM2G474326

2.0

ERF

Os01g54890

2.7

OsERF922

MCL13082

 ZM2G093270

1.4

PLATZ transcription factor

Os10g42410

3.7

zinc-binding protein

MCL17475

 ZM2G101058

1.3

GATA28

Os10g40810

0.7

GATA zinc finger domain protein

MCL1807

 ZM2G361210

6.7

C2H2 Zinc finger protein ZAT11

Os03g60570

5.7

ZFP15, C2H2 zinc finger protein

MCL13769

 ZM2G061626

5.3

C2H2 zinc finger protein

Os03g60560

7.5

ZFP182, C2H2 zinc finger protein

MCL13770

 ZM2G158328

3.3

WRKY40

Os01g60600

2.0

WRKY108

MCL17062

Phytohormone signaling

 ZM2G014392

4.6

vp14, 9-cis-epoxycarotenoid dioxygenase

Os03g44380

3.4

OsNCED3, 9-cis-epoxycarotenoid dioxygenase

MCL9668

 ZM2G427451

0.8

AIR12

Os08g41290

0.7

AIR12, auxin-induced in root cultures

MCL9576

 ZM2G036351

5.3

ZIM transcription factor

Os03g08330

3.5

OsJAZ10, ZIM domain containing protein

MCL14008

 ZM2G173630

1.6

GID1 (GA-insensitive dwarf)

Os05g33730

−0.7

gibberellin receptor GID1L2

MCL4519

 ZM2G033846

3.3

caltractin

Os03g19720

3.7

EF hand family protein

MCL5182

 ZM2G312661

1.8

Calmodulin

Os03g21380

1.5

OsCML27, Calmodulin-related protein

MCL16352

Cell wall

 ZM2G110558

1.1

UDP-glucuronate 4-epimerase

Os02g54890

0.9

UDP-glucuronate 4-epimerase

MCL7320

 ZM2G042179

0.8

UDP-glucuronate 4-epimerase

   

MCL7320

 ZM2G015886

0.7

Cellulose synthase D4

Os12g36890

0.9

CSLD4, cellulose synthase-like family D,

MCL85

 ZM2G135743

1.0

glycogenin-like starch initiation protein

Os01g65780

−0.9

glycosyl transferase

MCL1732

Posttranslational modification

 ZM2G172230

2.4

CaseinoLytic Protease ClpD, chloroplastic

Os02g32520

1.3

OsClpD1, early responsive to dehydration ERD1

MCL2599

 ZM2G328785

3.5

ZmPK1, receptor protein kinase

Os11g03820

−1.3

S-locus-like receptor protein kinase

MCL8097

 ZM2G359986

1.8

Wall-associated receptor kinase-like 20

Os05g25390

2.4

tyrosine protein kinase

MCL7431

 ZM2G443509

−0.7

protein phosphatase 2C

Os04g33080

−1.2

protein phosphatase 2C

MCL2430

  1. The DEGs identified in both previous reports [39, 40] are in bold, and the DEGs underlined are also Cd-responsive in previous report [19]