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Table 4 SNP frequency in housekeeping genes in A. flavus

From: Do environmentally induced DNA variations mediate adaptation in Aspergillus flavus exposed to chromium stress in tannery sludge?

Gene ID NRRL3357

Gene ID TERIBR1

Annotation

Gene length (nucl)

change in nucl

change in aa

status of SNPs

AFL2T_10032

g899

Calmodulin

4047

0

0

0

AFL2T_10117

g962

RPL5 (ribosomal protein)

1071

0

0

0

AFL2T_03358

g2143

Polyketide Synthase Acetate

1692

0

0

0

AFL2T_03019

g2421

Chitin Synthase 1

2655

0

0

0

AFL2T_08232

g3003

cyclophilin

522

0

0

0

AFL2T_08160

g3065

Ubiquitin-conjugating enzyme

450

0

0

0

AFL2T_01340

g5399

Vacuolar protein sorting association protein

324

0

0

0

AFL2T_01191

g5533

Cytochrome oxidase

348

0

0

0

AFL2T_12005

g6415

Ubiquitin-conjugating enzyme

510

0

0

0

AFL2T_02547

g6955

Ubiquitin-conjugating enzyme

513

0

0

0

AFL2T_02762

g7132

L- Asparaginase

690

0

0

0

AFL2T_09767

g7323

ATP_D (ATP synthase subunit beta)

1821

0

0

0

AFL2T_06390

g8072

Polyketide Synthase Acetate

2529

0

0

0

AFL2T_09983

g10276

Ubiquitin-conjugating enzyme

501

0

0

0

AFL2T_09876

g10370

L- Asparaginase

1677

0

0

0

AFL2T_07389

g10698

Elongation Factor Alpha like protein

1185

0

0

0

AFL2T_06969

g3347

ATP_D (Atp synthase subunit beta)

1539

0

0

0

AFL2T_06937

g3377

Chitin Synthase 1

5283

0

0

0

AFL2T_05991

g6789

GAPDH/Glyceraldehyde 3-phosphate dehydrogenase

1524

0

0

0

AFL2T_02677

g7061

Vacuolar protein sorting association protein

1563

0

0

0

AFL2T_05240

g3927

cyclophilin

1122

0

0

0

AFL2T_02454

g5775

TBPI (tata box binding protein)

690

0

0

0

AFL2T_03769

g1786

Actin interacting protein 3

2931

0

0

0

AFL2T_05664

g6503

Histone

807

0

0

0

AFL2T_11201

g8361

Ubiquitin-conjugating enzyme

333

0

0

0

AFL2T_12447

g9127

Ubiquitin-conjugating enzyme

837

0

0

0

AFL2T_12048

g11077

DNA Topoisomerase II

1032

0

0

0

AFL2T_04711

g9681

Ubiquitin-conjugating enzyme

450

0

0

0

AFL2T_07021

g3301

Ubiquitin-conjugating enzyme

474

0

0

0

AFL2T_07052

g3271

Lactate Dehydrogenase A

1065

0

0

0

AFL2T_11998

g6422

Ubiquitin-conjugating enzyme

456

0

0

0

AFL2T_05713

g6542

Vacuolar protein sorting association protein

387

0

0

0

AFL2T_03033

g2409

Chitin Synthase 1

1671

0

0

0

AFL2T_08388

g2865

Vacuolar protein sorting association protein

2022

0

0

0

AFL2T_08078

g3130

Histone

429

0

0

0

AFL2T_05673

g6508

28 s rRNA

450

0

0

0

AFL2T_04621

g9757

cyclophilin

630

0

0

0

AFL2T_07907

g4829

Vacuolar protein sorting association protein

351

0

0

0

AFL2T_01105

g5607

Ubiquitin-conjugating enzyme

1167

0

0

0

AFL2T_09240

g6218

Ubiquitin-conjugating enzyme

558

0

0

0

AFL2T_09015

g9269

Polyketide Synthase Acetate

6828

0

0

0

AFL2T_10236

g1076

Vacuolar protein sorting association protein

2313

0

0

0

AFL2T_05795

g6613

28 s rRNA

1815

0

0

0

AFL2T_03329

g2169

Ubiquitin-conjugating enzyme

2631

0

0

0

AFL2T_09350

g6131

18 s rRNA

2382

0

0

0

AFL2T_00575

g419

Chitin Synthase 1

3588

C150T

H50H

sSNPs

AFL2T_00433

g530

Vacuolar protein sorting association protein

2562

C1483G

P496A

nsSNPs

AFL2T_02076

g8000

Elongation Factor Alpha like protein

3222

A890C

K297Q

nsSNPs

AFL2T_09781

g7310

Vacuolar protein sorting association protein

2925

T1645C

S548S

sSNPs

AFL2T_09150

g8774

Polyketide Synthase Acetate

7425

T5820C

L1938 L

sSNPs

AFL2T_06936

g3378

Chitin Synthase 1

5574

A315G, C2100T, A2841T

G105G, D700D, I947I

sSNPs

AFL2T_06204

g8236

Chitin Synthase 1

3315

C1668T

L556 L

sSNPs

AFL2T_02195

g6007

Vacuolar protein sorting association protein

4545

A2925G, C4044T

E975E, F1348F

sSNPs

AFL2T_08239

g2996

Calmodulin

5103

A260G, T2232C, C2757G

D87G, T744 T, L919 L

nsSNPs, sSNPs, sSNPs

AFL2T_07518

g5174

Polyketide Synthase Acetate

6366

G1575A, G3053A

S525 N, S1018 N

nsSNPs

AFL2T_00612

g388

ATP_D (Atp synthase subunit beta)

1671

A1515C

A505A

sSNPs

AFL2T_05167

g3861

Vacuolar protein sorting association protein

3528

G456 T, G807A

G152G, T269 T

sSNPs

AFL2T_04317

g9038

Vacuolar protein sorting association protein

1920

T1383C

I461I

sSNPs

AFL2T_12048

g6382

DNA Topoisomerase II

3183

T1871C

V624A

nsSNPs

AFL2T_12403

g9165

Polyketide Synthase Acetate

4944

T1265C, C2231T, Y2271G

M422 T, T744I, X757K

nsSNPs

AFL2T_08114

g3103

Elongation Factor Alpha like protein

1383

T273A

I91I

sSNPs

AFL2T_02416

g5810

Vacuolar protein sorting association protein

2124

C1606T

L536 L

sSNPs

AFL2T_06144

g8287

aflatoxin regulatory protein

945

C46T

L16F

nsSNPs

AFL2T_07648

g5058

Ubiquitin-conjugating enzyme

1278

T570C

G190G

sSNPs

AFL2T_03037

g2405

secretory lipase

1353

W1271A

X424N

nsSNPs

AFL2T_05603

g4255

Vacuolar protein sorting association protein

2757

C1164T, G1491 T, C1884T

I388I, T497 T, I628I

sSNPs

AFL2T_09157

g8767

Ras protein

6435

C1509T, A2193G, G2304A, T2358C, G3018C, G4056A

S503S, S731S, L768 L, N786 N, T1006 T, P1352P

sSNPs

AFL2T_12399

g9169

Chitin Synthase 1

3222

C1317G

V439 V

sSNPs

AFL2T_06989

g3329

Elongation Factor Alpha like protein

2583

T1461C

T487 T

sSNPs

AFL2T_11104

g8446

Polyketide Synthase Acetate

7482

T3962C, A5970G, A5981G

M1320 T, I1990M, D1994G

nsSNPs

AFL2T_01971

g7909

Vacuolar protein sorting association protein

5862

G281A, A2246T, A2316G, C2766T, T3135A

R94K, N749I, S772S, I922I, D1045E

nsSNPs, nsSNPs, sSNPs, sSNPs, nsSNPs

AFL2T_01302

g5433

Vacuolar protein sorting association protein

2457

C704T, T828C

A235V, G276G

nsSNPs

AFL2T_11645

g4481

ATP_D (Atp synthase subunit beta)

1116

T972C

I324I

sSNPs

AFL2T_04569

g9796

Elongation Factor Alpha like protein

2400

C546T, T1785C, T2253C

D182D, L595 L, F751F

sSNPs

AFL2T_05904

g6711

Elongation Factor Alpha like protein

2730

T146C, C1836T, G2002A, A2435G

F49S, P612P, V668I, D812G

nsSNPs, sSNPs, nsSNPs, nsSNPs

AFL2T_02030

g7958

Ubiquitin-conjugating enzyme

1176

T641C

V214A

nsSNPs

AFL2T_09952

g10303

TBPI (tata box binding protein)

1338

T789G

Y263Y

sSNPs

AFL2T_02696

g7079

Elongation Factor Alpha like protein

2169

T576C, A825T, G1332A, T1557C

D192D, I275I, E444E, F519F

sSNPs

AFL2T_12346

g8605

Elongation Factor Alpha like protein

2874

A1914G

E638E

sSNPs

AFL2T_10814

g1537

Ubiquitin-conjugating enzyme

708

C507T

D169D

sSNPs

AFL2T_07094

g3237

Polyketide Synthase Acetate

6606

T3478A, T4780C, G4927A, A5446G, G5677A, T5862C,T6264C

C1160S, Y1594H, E1643K, N1816D, A1893T, S1954S, C2088C

nsSNPs, nsSNPs, nsSNPs, nsSNPs, nsSNPs, sSNPs, sSNPs

AFL2T_02027

g7956

Vacuolar protein sorting association protein

1044

T663C

Y221Y

sSNPs

AFL2T_06635

g3639

L- Asparaginase

1074

A257G, C663A

D86G, N221 K

nsSNPs

AFL2T_09646

g7430

Ubiquitin-conjugating enzyme

921

T6C, G36C

S2S, A12A

sSNPs

AFL2T_01296

g5440

Vacuolar protein sorting association protein

876

C93T, G369A

T31 T, L123 L

sSNPs

AFL2T_05777

g6597

Vacuolar protein sorting association protein

2058

T538C, G1317A, G1438A, G1938C

Y180H, S439S, E480K, K646 N

nsSNPs, sSNPs, nsSNPs, nsSNPs

AFL2T_08606

g2683

Chitin Synthase 1

5172

G3339A, G3618A, A3831G, G4764C, G4952A

T1113 T, L1206 L, L1277 L, P1588P, R1651Q

sSNPs, sSNPs, sSNPs, sSNPs, nsSNPs

AFL2T_09101

g9340

Elongation Factor Alpha like protein

2859

C1173T, G1275A, T1895C, G1947A, A2172G, C2670T

D391D, L425 L, V632A, R649R, V724 V

sSNPs, sSNPs, nsSNPs, sSNPs, sSNPs

AFL2T_08131

g3088

cyclophilin

486

C158T

A53V

nsSNPs

AFL2T_00781

g238

Polyketide Synthase Acetate

6951

G2689A, C3072T, A3121G, A3864G

V897I, F1024F, F1041A, K1288 K

nsSNPs, sSNPs, nsSNPs, nsSNPs

AFL2T_01027

g12

Vacuolar protein sorting association protein

732

K401C

X134A

nsSNPs

AFL2T_00198

g739

Ubiquitin-conjugating enzyme

3240

C849A, T852A, G1475C, T1905C, A2459G, G2659A

F283 L, I284I, R492P, G635G, N820S, A887T

nsSNPs, sSNPs, nsSNPs, sSNPs, nsSNPs, nsSNPs

AFL2T_11313

g4750

aflatoxin regulatory protein

1164

T208C, C889A, G922A

S70P, E297E, G308R

nsSNPs, sSNPs, nsSNPs

AFL2T_08488

g2771

Elongation Factor Alpha like protein

3249

G1398A, A1683A, G2161A, G2328A

E466E, V561 V, A721T, Q776Q

sSNPs, sSNPs, nsSNPs, sSNPs

AFL2T_07094

g10842

Polyketide Synthase Acetate

1455

G526A, T711C, T1113C, A295G

A176T, S237S, L371 L

nsSNPs, sSNPs, sSNPs

AFL2T_06011

g6804

Ubiquitin-conjugating enzyme

504

A210G

P70P

sSNPs

AFL2T_01283

g5448

Chitin Synthase 1

2589

T1072C, A1536G

N358 N, K512 K

sSNPs

AFL2T_02416

g10910

Vacuolar protein sorting association protein

370

A55T

L18 L

sSNPs

AFL2T_05917

g6723

Ubiquitin-conjugating enzyme

741

A567G

K189 K

sSNPs

AFL2T_11034

g8506

GAPDH/Glyceraldehyde 3-phosphate dehydrogenase

1077

C237T, C357A

H79H, G119G

sSNPs

AFL2T_02787

g7154

Cytochrome oxidase

1482

A849G, C857T, A1003T,

E283E, T286I, T335F

sSNPs, nsSNPs, nsSNPs

AFL2T_03260

g2222

secretory lipase

1365

C936T, G985A, T990C, G1286A, T1291C

N312 N, G329R, T330 T, G429D, L431 L

sSNPs, nsSNPs, sSNPs, nsSNPs, sSNPs

AFL2T_07361

g10719

Lactate Dehydrogenase A

933

G702C, C753T, G879A

G234G, F251F, V293 V

sSNPs

AFL2T_09556

g7507

Ras protein

1458

C565T, G681A, T771C, T1047A

L189 L, T227 T, T257 T, P349P

sSNPs

AFL2T_03516

g2002

Vacuolar protein sorting association protein

2853

A1176C, C1180T

G392G, L394 L

sSNPs

AFL2T_04629

g9750

Elongation Factor Alpha like protein

1443

T475G, C543T, G1185C, T1302C

T181 T, V395 V, A434A

sSNPs

AFL2T_01738

g8814

cyclophilin

1638

A501C, A513G, A522G, A624G, T1011C, A1043G, T1176C

V167 V, E171E, V174 V, E208E, A337A, K348R, L392 L

sSNPs, sSNPs, sSNPs, sSNPs, sSNPs, nsSNPs, sSNPs

AFL2T_04801

g9604

Cytochrome oxidase

555

T207A, T463G

G69G, F155C

sSNPs, nsSNPs

AFL2T_12397

g9171

Vacuolar protein sorting association protein

1758

T1659C

G553G

sSNPs

AFL2T_08911

g9862

Polyketide Synthase Acetate

7170

T3097C, A3519C, G3689A, A3761T

W1033R, T1173 T, R1230Q, Y1254F

nsSNPs, sSNPs, nsSNPs, nsSNPs

AFL2T_00897

g134

cyclophilin

1893

G616 T, C855T, T1191C, A1222G

V206 L, F285F, Y397Y, T408A

nsSNPs, sSNPs, sSNPs, nsSNPs

AFL2T_04106

g10177

cyclophilin

642

A72T

T24 T

sSNPs

AFL2T_06925

g3387

Cytochrome oxidase

348

C63A

V21 V

sSNPs

AFL2T_07038

g3286

Chitin Synthase 1

2076

G1794A

T598 T

sSNPs

AFL2T_08473

g2782

cyclophilin

498

C320G

T107 T

sSNPs

AFL2T_01646

g2579

secretory lipase

909

C10T, T309C, G509C, C646T

L4L, H103H, R170P, L216 L

sSNPs, sSNPs, nsSNPs, sSNPs

AFL2T_03998

g10190

Histone

768

C96T, A255G, C391T

F32F, S85S, P131S

sSNPs, sSNPs, nsSNPs

AFL2T_07224

g5682

aflatoxin regulatory protein

1218

C318G, G408C, G552 T, C581T, A794G, A979G, G1075A, C1137T

T106 T, P136P, S184S, A194V, Y265C, S327G, V359 M, S379S

sSNPs, sSNPs, sSNPs, nsSNPs, nsSNPs, nsSNPs, nsSNPs, sSNPs

AFL2T_00797

g223

L- Asparaginase

1137

T426C, T693C, G831C, C855T, T858C

G142G, G231G, Q277H, I285I, D286D

sSNPs, sSNPs, nsSNPs, sSNPs, sSNPs

AFL2T_08030

g3169

secretory lipase

1269

A642G, A795G, T903C, A904G, A913G, T927C, T933C, T963C, C1140T

A214A, L265 L, Y301Y, N302D, I305V, D309D, F311F, N321 N, G380G

sSNPs, sSNPs, sSNPs, sSNPs, nsSNPs, sSNPs, sSNPs, sSNPs, sSNPs

AFL2T_08467

g2788

cyclophilin

1641

T83C, C408A, G610A, G655A, T666C, C690T, T750A, A789G

V28A, L136 L, A204T, A219T, F222F, Y230Y, T250 T, E263E

nsSNPs, sSNPs, nsSNPs, nsSNPs, sSNPs, sSNPs, sSNPs, sSNPs

AFL2T_04948

g9453

Polyketide Synthase Acetate

1977

C1314G, T1444C, G1519A, A1590G, C1767A, C1854T, G1962A

R438R, W482R, V507I, L530 L, I589I, N618 N, R654R

sSNPs, nsSNPs, nsSNPs, sSNPs, sSNPs, sSNPs, sSNPs

AFL2T_07791

g4925

Vacuolar protein sorting association protein

3813

G39A, C213G, G234A, A291G, C354T

L13 L, S71S, Q78Q, E97E, H118H

sSNPs

AFL2T_12205

g8728

secretory lipase

939

T25C, G182A, T380C, C435T, T699C, T714G, G768A, G828A

L8L, S61 N, I127T, S145S, I233I, L238 L, P256P, A276A

sSNPs, nsSNPs, nsSNPs, sSNPs, sSNPs, sSNPs, sSNPs, sSNPs

AFL2T_01987

g7921

cyclophilin

537

A504G

,K168 K

sSNPs

AFL2T_05263

g3947

Vacuolar protein sorting association protein

891

G301A, G401A, C558T, C654T, T749G, A750G, A775G

A101T, G134D, D186D, I218I, I250R, I250R, M259 V

nsSNPs, nsSNPs, sSNPs, sSNPs, nsSNPs, nsSNPs, nsSNPs

AFL2T_01745

g8808

GAPDH/Glyceraldehyde 3-phosphate dehydrogenase

1041

C192G, T222C, C345T, C348T, C393T, T474C

D64E, I74I,G115G, A116A, F113F, A158A

nsSNPs, sSNPs, sSNPs, sSNPs, sSNPs, sSNPs

AFL2T_04609

g9767

RPL5 (ribosomal protein)

531

C153T

Y51Y

sSNPs

  1. Frequency of SNPs = 0.9 SNPs/kb
  2. Frequency of sSNPs = 0.7 SNPs/kb
  3. Frequency of nsSNP = 0.4 SNPs/kb