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Table 1 Several selection regions and candidate genes with previous evidences across four groups including North, Northwest, Southwest and South groups

From: Genome-wide scan reveals genetic divergence and diverse adaptive selection in Chinese local cattle

Chr

Start

End

Group

Candidate Gene

References

2

126,079,431

126,252,390

Northwest

PPP1R8

[34]

5

48,838,857

49,040,943

North; Northwest; Southwest; South

WIF1

[3]

5

57,490,826

57,729,851

Northwest; Southwest; South

CDK2; DGKA; IKZF4 PMEL; RAB5B; RPS26; SUOX

[36]

6

38,917,456

39,220,461

North

LCORL

[27]

7

4,529,302

4,762,339

Northwest; Southwest

ELL, FKBP8, GDF15; ISYNA1 LRRC25; SSBP4

[35]

7

47,559,314

47,821,784

North; Southwest

SAR1B

[30]

7

49,826,844

49,997,049

North; Northwest

SPOCK1

[3]

7

51,476,325

51,727,698

North; Northwest; Southwest; South

HSPA9

[30]

7

52,240,425

52,499,466

North; Northwest; Southwest; South

UBE2D2

[33]

7

53,107,671

53,401,992

North; Northwest; Southwest

HBEGF

[32]

8

60,334,817

60,589,007

Northwest; Southwest

NPR2

[4]

12

29,083,909

29,372,191

Southwest; South

RXFP2

[34]

13

49,457,188

49,707,937

Southwest

BMP2

[25]

14

1,549,928

1,901,893

Northwest; Southwest; South

DGAT1

[30]

14

24,769,617

25,001,051

Northwest; Southwest

LYN; TGS1; RPS20

[25]

16

44,291,131

44,636,778

North; Northwest; Southwest

NMNAT1

[30]

16

44,639,909

44,883,644

North; Northwest; Southwest

PIK3CD; TMEM201

[35]

16

73,481,886

73,711,818

South

LPGAT1

[28]

18

14,408,694

14,697,775

Northwest

CPNE7; FANCA; SPG7

[25]