Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley

BMC Genomics

Table 3 List of deleted and flanking genes present in rpr9 deletion region on barley chromosome 3H

Gene Name	Start	End	Annotation	Exome capture reads		Ratio
Gene Name	Start	End	Annotation	Q21861	rpr9	(rpr9/Q21861)
HORVU3Hr1G074850	560,316,839	560,326,306	plastid transcriptionally active 12	2574	2264	0.879
HORVU3Hr1G074910	560,447,102	560,448,070	O-acyltransferase (WSD1-like) family protein	13	10	0.769
HORVU3Hr1G074920	560,659,267	560,660,724	Peroxidase superfamily protein	4075	3	0.001
^aHORVU3Hr1G074930	560,737,798	560,739,850	Leucine-rich repeat receptor-like protein kinase (LRK) family protein	0	0	0
HORVU3Hr1G074940	560,884,155	560,885,580	Peroxidase superfamily protein	4075	7	0.001
HORVU3Hr1G074950	560,902,589	560,904,079	Peroxidase superfamily protein	5063	5	0.001
HORVU3Hr1G074960	560,934,358	560,935,865	Peroxidase superfamily protein	4835	269	0.056
HORVU3Hr1G074970	561,006,112	561,007,794	SKP1-like 9	8	0	0
HORVU3Hr1G075000	561,254,447	561,255,632	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic	0	0	0
HORVU3Hr1G075010	561,255,634	561,256,481	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic	0	0	0
HORVU3Hr1G075030	561,299,425	561,299,615	RNAase	0	0	0
HORVU3Hr1G075040	561,302,733	561,304,797	L-tyrosine decarboxylase	1588	12	0.007
HORVU3Hr1G075050	561,432,288	561,438,786	F-box family protein	945	2	0.002
HORVU3Hr1G075060	561,500,252	561,501,311	Octicosapeptide/Phox/Bem1p family protein	70	93	1.32
HORVU3Hr1G075070	561,614,572	561,615,955	LEA protein-related	361	384	1.06

List of eleven annotated high confidence genes present in the rpr9 deletion region on barley chromosome 3H along with flanking genes in BARLEX database. The table contains the gene name, annotated physical sequence position for start and end positions for the coding determining sequence (CDS) on barley chromosome 3H, exome capture reads for Q21861 and the rpr9 mutant with their ratio
^adenotes the mis-annotated LRK gene present in the deletion region under the rpr9 QTL

ISSN: 1471-2164