Whole genome sequencing of Asia II 1 species of whitefly reveals that genes involved in virus transmission and insecticide resistance have genetic variances between Asia II 1 and MEAM1 species

Table 3 Classification of effects and their number in the whole genome

Type of Effects		No of Effects
		Count	Percent
High Effect	Total	1821	0.052
Splice acceptor variant		96	0.003
Splice donor variant		135	0.004
Start loss		56	0.002
Stop gain		371	0.003
Stop lost		96	0.003
Frame shift		1102	0.031
Moderate Effect	Total	35,583	2.724
Conservative inframe deletion		49	0.001
Conservative inframe insertion		83	0.002
Disruptive inframe deletion		98	0.003
Disruptive inframe insertion		74	0.002
Missense variant		35,285	1.004
Low Effect	Total	95,439	1.015
5′ UTR premature start gain		3020	0.086
Splice region variant		10,980	0.312
Stop retained		106	0.003
Synonymous variant		83,150	2.366
Initiator codon/ non syn start		15	0
Modifier Effects	Total	3,371,168	96.209
3′ UTR		174,811	4.974
5′ UTR		23,577	0.671
Downstream		485,837	13.823
Upstream		421,908	12.041
Non-coding transcript		470	0.013
Intron variant		1,479,087	42.082
Intergenic regions		794,375	22.67

ISSN: 1471-2164