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Table 2 Differentially methylated CpGs and their location in genomes of different pig breeds with FDR of < 5% and methylation difference of > 25%

From: Epigenome-wide skeletal muscle DNA methylation profiles at the background of distinct metabolic types and ryanodine receptor variation in pigs

Breed

No. of differentially methylation CpGs

Hypermethylation breeds (No.)

Location of differentially methylated CpGs

Exons

Introns

Promoter region around TSS (within 2 kb)

DuPi vs Duroc

1303

Duroc (846)

55

252

60

DuPi vs PiPP

1352

PiPP (601)

79

268

73

DuPi vs PiNN

1440

PiNN (650)

62

281

61

Duroc vs PiPP

2276

PiPP (861)

110

432

108

Duroc vs PiNN

2303

PiNN (899)

102

438

119

PiPP vs PiNN

1060

PiNN (549)

33

222

55