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Table 4 Unique miRNA mature sequences present on the floral transcriptome of sexual and apomictic P. notatum

From: Small RNA-seq reveals novel regulatory components for apomixis in Paspalum notatum

miRNA mature sequence

nt

Accession*

Pn

Os

Sb

Si

Family

GCUCACUUCUCUUCCUGUCAGC

22

MIMAT0015124

0

0

0

1

miR156

GCUCACUUCUCUCUCUGUCAGU

22

MIMAT0015129

0

0

1

0

miR156

GCUCACUGCUCUGUCUGUCAUC

22

MIMAT0015128

0

1

1

1

miR156

UUGACAGAAGAGAGUGAGCAC

21

MIMAT0026186

0

1

0

0

miR156

UUUGGAUUGAAGGGAGCUCUG

21

MIMAT0001023

0

1

1

1

miR159

UGCCUGGCUCCCUGUAUGCCA

21

MIMAT0000178

1

0

2

2

miR160

UGGAGAAGCAGGGCACGUGCA

21

MIMAT0000185

0

1

1

1

miR164

UGGAGAAGCAGGGCACGUGCU

21

MIMAT0001034

0

1

1

1

miR164

CAUGUGCCCAUCUUCUCCACC

21

MIMAT0015138

0

1

0

0

miR164

CACGUGCUCCCCUUCUCCACC

21

MIMAT0015319

0

1

0

0

miR164

UCGGACCAGGCUUCAUUCCUC

21

MATAT0001072

0

1

1

1

miR166

UCGGACCAGGCUUCAUUCCCC

21

MIMAT0000189

0

5

5

5

miR166

UCGGACCAGGCUUCAAUCCCU

21

MIMAT0001037

0

1

2

2

miR166

UGAAGCUGCCAGCAUGAUCUGA

22

MIMAT0014072

1

1

1

0

miR167

UGAAGCUGCCAGCAUGAUCUA

21

MIMAT0000196

0

1

1

2

miR167

UCGCUUGGUGCAGAUCGGGACC

22

MIMAT0001045

0

1

1

1

miR168

UGGGCGGUCACCUUGGCUAGC

21

MIMAT0026431

0

0

1

1

miR169

UUGAGCCGCGUCAAUAUCUCC

21

MIMAT0014082

0

1

1

1

miR171

GGAUAUUGGUGCGGUUCAAUC

21

MIMAT0022877

0

1

0

0

miR171

GUGGUAUUGUUCCGGCUCAUG

21

MIMAT0037190

0

1

1

1

miR171

UUGGACUGAAGGGUGCUCCCU

21

MIMAT0020761

0

1

1

1

miR319

AAGCUCAGGAGGGAUAGCGCC

21

MIMAT0000931

0

1

0

0

miR390

UCCAAAGGGAUCGCAUUGAUC

21

MIMAT0000957

1

1

1

0

miR393

GUUCUCCUCAAGCACUUCACA

21

MIMAT0015347

0

1

0

1

miR395

UCCACAGGCUUUCUUGAACUG

21

MIMAT0001601

0

0

0

1

miR396

UUCCACAGCUUUCUUGAACUG

21

MIMAT0000944

2

1

1

1

miR396

UUCCACAGCUUUCUUGAACUU

21

MIMAT0000945

0

1

0

1

miR396

UUGAGUGCAGCGUUGAUGAGC

21

MIMAT0025996

0

0

1

1

miR397

UGUGUUCUCAGGUCGCCCCCG

21

MIMAT0014020

0

0

1

0

miR398

UGCCAAAGGAGAGUUGCCCUG

21

MIMAT0000952

0

0

1

1

miR399

UGCCAAAGGAGAGCUGCCCUG

21

MIMAT0000992

0

1

1

1

miR399

UGGAAGGGGCAUGCAGAGGAG

21

MIMAT0014028

0

1

1

1

miR528

AGAAGAGAGAGAGUACAGCCU

21

MIMAT0014030

0

1

1

1

miR529

UGGGUGUCAUCUCUCCUGGAGC

22

MIMAT0015366

0

0

1

0

miR1432

UUCCCGAUGCCUCCCAUUCCUA

22

MIMAT0011741

0

0

1

0

miR2118

UUCCUGAUGCCUCCCAUUCCUA

22

MIMAT0011745

0

0

0

1

miR2118

UUUGGUUUCCUCCAAUGUCUCA

22

MIMAT0035533

0

0

0

1

miR2275

CUUGUUUUCCUCCAAUGUCUCA

22

MIMAT0037125

0

1

0

1

miR2275

CUUGGUUCCCUCCAAUAUCUCA

22

MIMAT0011758

1

0

0

0

miR2275

AGGAUUAGAGGGAACUGAACC

21

MIMAT0011769

0

1

1

1

miR2275

CUCUCGCCGGCGUGCGCACUCC

22

no hit

0

0

1

0

Pn_miR1

AGUGCGCCGCCGUCGAUCUGC

21

no hit

1

0

0

0

Pn_miR2

UUGACAGAAGAGAGCGAGCAC

21

no hit

0

0

1

1

Pn_miR3

UGACAGAAGAGAGUGAGCAC

20

no hit

1

0

2

1

Pn_miR4

UGACAGAAGAGAGAGAGCAC

20

no hit

0

0

1

1

Pn_miR5

GGGCAAAUCAUCUGGGCUACC

21

no hit

0

0

0

1

Pn_miR6

UGAGCCGAGCCAAUAUCACUUC

22

no hit

0

1

1

1

Pn_miR7

UAUUGUCUCGGCUCACUCAGA

21

no hit

0

1

2

2

Pn_miR8

  1. Sequences were detected by using four references: Pn: Paspalum transcriptome; Os: Oryza sativa Japonica genome; Sb: Sorghum bicolor genome; Si: Setaria italica genome
  2. *Accession number was obtained by performing BLASTn analysis (SSEARCH option) of mature sequences on miRBase [48]