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Table 4 The most significantly differentially expressed genes between high and low RFI Holstein-Friesian steers across three dietary phases

From: The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

Diet and breed

Gene

LogFC

P-value

HF.H1

SNRPD3

−0.37

0.0010

AK3

−0.35

0.0013

GSTM1

−0.87

0.0061

MOB3B

0.72

0.0061

LOC782233

−5.45

0.0061

HPRT1

−0.33

0.011

ENSBTAG00000032859

−0.66

0.016

ACMSD

−1.04

0.024

PARM1

1.15

0.024

ANPEP

1.10

0.024

GUCY2D

−0.89

0.024

GSTA4

−0.88

0.026

RAB4A

−0.29

0.026

CYTH3

0.52

0.026

HSD17B6

−0.36

0.028

RAC1

0.35

0.038

HF.ZG

INPP1

0.73

0.005

ALAS1

−0.94

0.074

HF.H2

UOX

0.85

0.028

C1R

7.45

0.055

LOC100295234

2.92

0.055

SNCA

−3.61

0.055

FBP2

−3.06

0.055

  1. RFI residual feed intake, HF Holstein-Friesian, H1 high concentrate diet 1, H2 high concentrate diet 2, ZG zero-grazed grass diet, LogFC log2fold-change in low-RFI steers compared to high-RFI steers; P-value = Benjamini-Hochberg corrected P-value to account for multiple testing