Table 8 Number of scaffolds, scaffolds’ length, and N50 before and after using BNG consensus maps
From: Enhanced genome assembly and a new official gene set for Tribolium castaneum
Molecule | Scaffolds before | Scaffolds after | Length (Mb) before | Length (Mb) after | N50 (kb) before | N50 (kb) after | Unplaced scaffolds added |
|---|---|---|---|---|---|---|---|
LG1 = X | 13 | 4 | 7.34 | 8.92 | 1160.70 | 7264.05 | 2 |
LG2 | 18 | 8 | 14.78 | 15.034064 | 1207.76 | 9314.472 | 0 |
LG3 | 29 | 18 | 29.78 | 31.017975 | 1409.81 | 2672.697 | 3 |
LG4 | 6 | 3 | 12.11 | 12.24 | 2906.70 | 9484.15 | 0 |
LG5 | 17 | 7 | 14.64 | 15.36 | 1402.64 | 4484.65 | 1 |
LG6 | 12 | 9 | 9.02 | 9.25 | 956.12 | 2189.88 | 0 |
LG7 | 15 | 6 | 15.74 | 16.48 | 1333.70 | 8809.74 | 0 |
LG8 | 14 | 9 | 13.66 | 13.98 | 1312.85 | 4002.45 | 1 |
LG9 | 21 | 10 | 15.81 | 16.12 | 893.90 | 4920.63 | 0 |
LG10 | 12 | 11 | 7.54 | 8.84 | 1198.49 | 1224.30 | 3 |
Unplaced | 2083 | 2072 | 20.33 | 17.35 | 150.43 | 104.32 | 2 |
Total | 2240 | 2157 | 160.74 | 164.60 | 1160.70 | 4002.45 | 12 |