Table 6 Repeat sequences present in the B. prionitis chloroplast genome
S/No | Repeat size | Repeat type | Repeat Position 1 | Repeat Location 1 | Repeat Position 2 | Repeat Location 2 | E-value |
1 | 41 | F | 97,869 | rpl2 | 118,701 | ndhA | 1.35E-15 |
2 | 41 | P | 118,701 | ndhA | 138,043 | rps12 | 1.35E-15 |
3 | 34 | F | 45,870 | IGS | 45,903 | IGS | 2.21E-11 |
4 | 32 | F | 42,498 | ycf3 Intron | 42,528 | ycf3 Intron | 3.53E-10 |
5 | 30 | P | 7813 | IGS-trnS-GCU | 44,688 | trnS-GGA | 5.65E-09 |
6 | 29 | F | 345 | IGS | 71 | IGS | 2.26E-08 |
7 | 27 | F | 45,851 | IGS | 45,867 | IGS | 3.62E-07 |
8 | 26 | P | 87,326 | ycf2 | 87,326 | ycf2 | 1.45E-06 |
9 | 26 | F | 87,326 | ycf2 | 148,601 | ycf2 | 1.45E-06 |
10 | 26 | P | 111,582 | IGS | 111,582 | IGS | 1.45E-06 |
11 | 26 | F | 122,197 | IGS | 122,222 | IGS | 1.45E-06 |
12 | 26 | P | 148,601 | ycf2 | 148,601 | ycf2 | 1.45E-06 |
13 | 24 | F | 45,854 | IGS | 45,903 | IGS | 2.32E-05 |
14 | 23 | F | 43,353 | IGS | 97,871 | IGS | 9.26E-05 |
15 | 23 | F | 43,353 | IGS | 118,703 | IGS | 9.26E-05 |
16 | 23 | P | 43,353 | IGS | 138,059 | IGS | 9.26E-05 |
17 | 23 | F | 59,543 | IGS | 59,564 | IGS | 9.26E-05 |
18 | 23 | R | 65,867 | IGS | 65,867 | IGS | 9.26E-05 |
19 | 23 | F | 70,995 | IGS | 71,017 | IGS | 9.26E-05 |
20 | 22 | F | 9299 | trnG-GCC | 36,153 | trnG-UCC | 3.70E-04 |
21 | 22 | P | 30,692 | IGS | 30,692 | IGS | 3.70E-04 |
22 | 22 | F | 90,910 | IGS | 90,928 | IGS | 3.70E-04 |
23 | 22 | P | 90,910 | IGS | 145,003 | ycf2 | 3.70E-04 |
24 | 22 | P | 90,928 | IGS | 145,021 | ycf2 | 3.70E-04 |
S/No | Repeat size | Repeat type | Repeat Position 1 | Repeat Location 1 | Repeat Position 2 | Repeat Location 2 | E-value |
25 | 22 | P | 93,326 | IGS | 93,352 | IGS | 3.70E-04 |
26 | 22 | F | 93,326 | IGS | 142,579 | IGS | 3.70E-04 |
27 | 22 | F | 93,352 | IGS | 142,605 | IGS | 3.70E-04 |
28 | 22 | P | 142,579 | IGS | 142,605 | IGS | 3.70E-04 |
29 | 22 | F | 145,003 | ycf2 | 145,021 | ycf2 | 3.70E-04 |
30 | 21 | F | 82 | IGS | 103 | IGS | 1.48E-03 |
31 | 21 | F | 7819 | trnS-GCU | 35,296 | trnS-UGA | 1.48E-03 |
32 | 21 | P | 35,296 | trnS-UGA | 44,691 | trnS-GGA | 1.48E-03 |
33 | 21 | F | 36,373 | trnfM-CAU | 66,402 | trnP-UGG | 1.48E-03 |
34 | 21 | R | 119,320 | IGS | 119,320 | IGS | 1.48E-03 |
35 | 20 | F | 3731 | IGS | 111,632 | IGS | 5.93E-03 |
36 | 20 | R | 30,031 | IGS | 30,031 | IGS | 5.93E-03 |
37 | 20 | R | 45,796 | IGS | 45,796 | IGS | 5.93E-03 |
38 | 20 | R | 49,989 | ndhC | 49,989 | ndhC | 5.93E-03 |
39 | 20 | P | 51,944 | trnV-UAC | 102,610 | trnA-UGC | 5.93E-03 |
40 | 20 | F | 51,944 | trnV-UAC | 133,323 | trnA-UGC | 5.93E-03 |
41 | 20 | P | 56,548 | IGS | 56,548 | IGS | 5.93E-03 |
42 | 20 | F | 57,115 | IGS | 57,135 | IGS | 5.93E-03 |
43 | 20 | P | 73,944 | IGS | 73,967 | IGS | 5.93E-03 |
44 | 20 | P | 123,426 | ycf1 | 123,426 | ycf1 | 5.93E-03 |
45 | 19 | P | 70,448 | IGS | 123,029 | ycf1 | 2.37E-02 |
46 | 18 | F | 249 | IGS | 272 | IGS | 9.48E-02 |
47 | 18 | P | 1946 | IGS | 42,695 | ycf3 Intron | 9.48E-02 |
48 | 18 | R | 7245 | IGS | 7245 | IGS | 9.48E-02 |
49 | 18 | F | 7884 | trnS-GCU | 35,366 | trnS-UGA | 9.48E-02 |