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Table 3 Summary of the QTL in the CSSLs

From: Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton

Traits

QTL

Blocks

Chr.

LOD

PVE (%)

Additive Effect

Block Interval

Publication

Start

End

PH

q-PHD01

block329

D01

3.33

4.78

1.02

3,186,046

4,556,068

 

FFBH

q-FFBHA02

block67

A02

2.81

4.04

0.34

44,641,617

45,470,669

 

BN

q-BNA05

block125

A05

3.67

4.86

0.97

31,292,912

34,892,387

 
 

q-BNA09

block224

A09

3.63

4.81

0.59

60,202,506

62,601,458

 
 

q-LPD02

block352

D02

2.59

3.41

−0.63

62,288,058

63,106,259

 

BWT

q-BWTA08

block205

A08

3.04

3.97

−0.35

93,642,362

102,084,301

 
 

q-BWTD03

block358

D03

2.81

3.65

− 0.15

731,194

1,330,783

 

LP

q-LPA01

block3

A01

6.40

6.95

−1.83

2,639,939

3,677,553

 
 

q-LPA05

block122

A05

4.57

4.89

−1.27

23,097,331

26,299,649

 
 

q-LPA07

block171

A07

3.29

2.99

−1.19

86,057,988

88,357,231

 
 

q-LPA11

block278

A11

5.10

5.48

−1.63

120,826,316

121,562,473

 
 

q-LPD03

block371

D03

8.39

9.24

−2.06

33,453,595

43,516,324

 
 

q-LPD10

block536

D11

2.62

2.37

−1.23

4,523,812

5,385,834

 

SI

q-SIA09

block222

A09

4.79

2.48

0.31

54,020,891

58,352,764

 
 

q-SIA11

block278

A11

4.02

2.06

0.28

120,826,316

121,562,473

 
 

q-SIA12

block281

A12

4.31

2.21

0.33

12,595

809,856

 
 

q-SID03

block373

D03

3.38

1.73

0.36

44,469,168

47,084,844

 
 

q-SID04–1

block381

D04

17.64

10.03

1.23

2,305,353

3,131,469

 
 

q-SID04–2

block384

D04

24.46

14.67

−1.05

4,507,347

6,673,788

 
 

q-SID07

block446

D07

4.76

2.45

−0.08

5,062,647

5,765,634

 
 

q-SID08

block471

D08

3.85

1.98

−0.09

27,684

689,962

 

FL

q-FLA01

block21

A01

2.53

2.89

0.48

51,165,194

53,482,140

 
 

q-FLA02

block59

A02

8.10

9.60

0.70

2,981,374

3,502,835

 
 

q-FLD01

block329

D01

3.93

4.53

0.51

3,186,046

4,556,068

 
 

q-FLD06

block428

D06

2.78

3.17

0.80

8,954,143

12,114,917

 

FS

q-FSA01

block21

A01

2.53

2.89

0.48

51,165,194

53,482,140

 
 

q-FSA02

block59

A02

8.10

9.60

0.70

2,981,374

3,502,835

 
 

q-FSD01

block329

D01

3.93

4.53

0.51

3,186,046

4,556,068

 
 

q-FSD06

block428

D06

2.78

3.17

0.80

8,954,143

12,114,917

 

MIC

q-MICA02–1

block59

A02

6.99

7.09

−0.20

2,981,374

3,502,835

 
 

q-MICA02–2

block64

A02

3.70

3.65

0.28

14,861,013

15,326,651

 
 

q-MICA07

block171

A07

2.70

2.44

−0.16

86,057,988

88,357,231

 
 

q-MICA09

block226

A09

6.40

6.46

0.24

63,998,867

64,921,374

 
 

q-MICA10

block237

A10

2.60

2.54

0.33

1,292,885

1,451,802

 
 

q-MICA11

block278

A11

3.46

3.42

−0.19

120,826,316

121,562,473

 
 

q-MICD03

block371

D03

3.04

2.99

−0.18

33,453,595

43,516,324

 
 

q-MICD08

block471

D08

4.29

4.27

0.07

27,684

689,962

 
 

q-MICD11

block580

D11

2.64

2.59

−0.14

71,643,126

72,910,318

 

FEL

q-FELA03

block77

A03

4.84

6.91

0.62

1,173,846

2,339,035

 
 

q-FELD07

block446

D07

5.47

7.84

0.18

5,062,647

5,765,634

 
 

q-FELD08

block471

D08

3.16

4.45

0.17

27,684

689,962

Said et al.2015

FU

q-FUA07

block164

A07

3.01

5.57

0.36

8,903,355

12,793,020

 
 

q-FUA12

block282

A12

2.68

2.23

0.21

809,856

1,774,576

 

SFC

q-SFCA07

block164

A07

3.15

4.27

−0.64

8,903,355

12,793,020

 
 

q-SFCA12

block282

A12

3.51

4.78

−0.43

809,856

1,774,576

 

FM

q-FMA02

block64

A02

3.06

3.83

0.01

14,861,013

15,326,651

 
 

q-FMA11

block276

A11

2.94

3.83

−0.01

118,798,683

120,093,234

 
 

q-FMD03

block373

D03

2.53

3.21

−0.01

44,469,168

47,084,844

 
 

q-FMD12

block593

D12

2.94

3.83

−0.01

57,692,428

58,105,224

 

SOC

q-SOCA01–1

block3

A01

21.66

5.84

2.32

2,639,939

3,677,553

 
 

q-SOCA01–2

block4

A01

3.14

0.73

−1.17

3,677,553

4,874,638

 
 

q-SOCA01–3

block12

A01

21.59

5.82

1.90

14,607,137

17,693,930

 
 

q-SOCA01–4

block13

A01

8.52

2.08

−1.60

17,693,930

28,547,783

 
 

q-SOCA03

block94

A03

4.62

1.09

−1.16

96,774,034

98,312,105

 
 

q-SOCA05

block122

A05

6.73

1.62

1.00

23,097,331

26,299,649

 
 

q-SOCA07

block171

A07

6.71

1.62

1.22

86,057,988

88,357,231

 
 

q-SOCA11

block277

A11

6.08

1.45

1.32

120,093,234

120,826,316

 
 

q-SOCA12–1

block293

A12

28.34

8.05

3.12

82,990,142

84,639,641

 
 

q-SOCA12–2

block294

A12

17.02

4.43

−2.85

84,639,641

86,335,298

Yu et al.2012

 

q-SOCD01–1

block332

D01

34.76

10.40

−4.36

17,173,981

44,222,294

 
 

q-SOCD01–2

block333

D01

44.76

14.51

4.22

44,222,294

45,104,476

Yu et al.2012

 

q-SOCD03–1

block372

D03

8.57

2.08

1.60

43,516,324

44,469,168

 
 

q-SOCD03–2

block374

D03

4.38

1.01

1.95

47,084,844

48,284,786

 
 

q-SOCD10

block535

D10

10.08

2.49

2.14

4,155,341

4,523,812

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