Skip to main content

Table 2 Number of homo/hetero SNPs and InDels detected before and after data filtering

From: Genomic variation between PRSV resistant transgenic SunUp and its progenitor cultivar Sunset

 

Raw

DP10-100Q50a

Homo SNPs

83,926

40,871

Hetero SNPs

603,970

269,493

Total SNPs

687,896

310,364

Homo InDels

41,218

19,135

Hetero InDels

29,504

14,936

Total InDels

70,722

34,071

Total

758,618

344,435

  1. Notes: (a): Validated depth and quality. DP10-100Q50: The variant calls with read depths of < 10 or > 100 and polymorphism sites of quality < 50 were filtered out
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us