Gene coexpression network analysis and tissue-specific profiling of gene expression in jute (Corchorus capsularis L.)

Table 1 RNA sequencing statistics for tissues during two developmental stages in jute

Sample name	Clean reads (Millions)	Clean bases(Gb)	Q20(%)	Uniquely mapped (Millions)	Uniquely mapped rate (%)
BVGP1	51.27	7.70	97.15	47.93	93.48
BVGP2	47.76	7.16	97.28	44.75	93.70
BVGP3	51.17	7.68	96.81	47.94	93.70
Total of BVGP	150.20	22.54	97.08	140.63	93.62
BFP1	50.29	7.54	97.10	47.40	94.27
BFP2	45.46	6.82	97.02	42.18	92.79
BFP3	53.74	8.06	97.35	50.66	94.27
Total of BFP	149.48	22.42	97.15	140.24	93.82
LVGP1	45.88	6.88	96.99	42.82	93.33
LVGP2	46.00	6.90	96.68	42.40	92.17
LVGP3	53.38	8.00	96.66	49.08	91.94
Total of LVGP	145.26	21.78	96.78	134.29	92.45
LFP1	52.76	7.92	97.13	48.91	92.69
LFP2	48.52	7.28	97.11	45.19	93.14
LFP3	51.15	7.68	97.10	47.26	92.40
Total of LFP	152.43	22.88	97.11	141.36	92.74
FT1_1	52.53	7.88	97.13	49.64	94.48
FT1_2	47.48	7.12	96.88	43.99	92.66
FT1_3	45.50	6.82	96.87	42.24	92.83
Total of FT1	145.51	21.82	96.96	135.87	93.37
FT2_1	52.58	7.88	96.95	49.10	93.38
FT2_2	46.09	6.92	97.60	42.96	93.21
FT2_3	47.69	7.16	97.50	44.21	92.70
Total of FT2	146.36	21.96	97.35	136.27	93.10
MF	54.22	8.14	97.29	50.98	94.03
Total	943.45	141.54		879.63

MF mature flowers, LVGP leaf tissues of vegetative growth period, LFP leaf tissues of flowering period, FT1 Fruits < 0.8 cm in diameter, FT2 Fruits > 0.8 cm in diameter, BVGP bast of vegetative growth period, BFP bast of flowering period. Each tissue with three biological replicates

ISSN: 1471-2164