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Table 8 Cellular matrix and collagen related pathway

From: Transcriptome analysis reveals a molecular understanding of nicotinamide and butyrate sodium on meat quality of broilers under high stocking density

GO ID

Term Type

Description

P-value

Genes

Cellular matrix related pathways

 GO:0030198

BP

extracellular matrix organization

1.05E-06

MMP9; TGFBI; ABI3BP; POSTN; FBLN1, etc

 GO:0044420

CC

extracellular matrix component

2.83E-05

COL1A2; FN1; THBS2; THBS4; LTBP1, etc

 GO:0005578

CC

proteinaceous extracellular matrix

1.71E-11

FN1; THBS2; ADAMTS3; ADAMTS14; COL12A1, etc

 GO:0005614

CC

interstitial matrix

0.013106

FN1; ABI3BP

 GO:0043062

BP

extracellular structure organization

1.15E-06

MMP9; TGFBI; ABI3BP; ADAMTS14; POSTN, etc

 GO:0005201

MF

extracellular matrix structural constituent

0.017449

MGP; VCAN; FBLN1

 GO:0031232

CC

extrinsic component of external side of plasma membrane

0.032211

SERPINE2

 GO:0019897

CC

extrinsic component of plasma membrane

0.000874

SERPINE2; S100A6; RGS1; KCNAB1

 GO:1990430

MF

extracellular matrix protein binding

0.047928

ITGB8

Collagen related pathways

 GO:0032964

BP

collagen biosynthetic process

0.047928

ADAMTS3

 GO:0032963

BP

collagen metabolic process

0.027114

MMP9; ADAMTS3

 GO:0010712

BP

regulation of collagen metabolic process

0.023978

SERPINF2; FAP

 GO:0010710

BP

regulation of collagen catabolic process

0.032211

FAP

 GO:0030199

BP

collagen fibril organization

0.000216

ADAMTS14; SFRP2; LUM; SERPINF2

 GO:0005518

MF

collagen binding

0.00265

TGFBI; ABI3BP; COMP; LUM

 GO:0005540

MF

hyaluronic acid binding

0.037432

TNFAIP6; VCAN

 GO:0005581

CC

collagen trimer

0.000699

COL1A2; COL12A1; COLEC12; LUM; COL14A1

 GO:0005583

CC

fibrillar collagen trimer

0.001541

COL1A2; LUM

 GO:0005539

MF

glycosaminoglycan binding

3.59E-09

MDK; SLIT3; NOV; SERPINE2; JCHAIN, etc

 GO:1901617

BP

organic hydroxy compound biosynthetic process

0.033592

NR4A2; PLTP; LCAT; AKR1D1