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Table 1 Statistics of IR64 transcriptome sequencing result from control and cold shock

From: Understanding the early cold response mechanism in IR64 indica rice variety through comparative transcriptome analysis

Parameter

5652_CONTROL (CTR1)

6767_CONTROL (CTR2)

5652_COLD 2 h (CS1)

6767_COLD 2 h (CS2)

Globals

 Reference size

373,245,519

373,245,519

373,245,519

373,245,519

 Number of Reads

58,532,485

33,609,748

60,853,958

39,822,202

 Mapped paired reads

55,961,759 (95.61%)

32,135,283 (95.61%)

57,616,933 (94.68%)

38,452,860 (96.56%)

 GC content

51.19%

52.59%

51.95%

52.62%

 Unique transcripts

26,824

28,176

29,583

26,035

Coverage

 Mean

34.898

38.4396

32.9834

44.0307

 Standard deviation

252.3602

217.7016

277.5779

295.2094

Mapping

 Mean Quality

23.42

20.12

23.75

19.95