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Fig. 1 | BMC Genomics

Fig. 1

From: Genomic nucleotide-based distance analysis for delimiting old world monkey derived herpes simplex virus species

Fig. 1

Phylogenetic analysis of Old World monkey (OWM) derived simplex viruses. OWM viral genomic sequences (Table 1) were aligned with MAFFT ver. 7.394 and the optimal substitution model was calculated by IQ-Tree [42, 43]. a Phylogenetic network generated from the alignment using Splitstree ver. 4.14 and the HKY + G + I substitution model (gaps deleted; p-inv = 0.469; gamma = 1.138) [44] was used. b Maximum Likelihood tree was generated from an alignment using HSV-1 as an outgroup using RAxMLGUI (GTRCATI; ver 1.3) [45]. Figure c shows a macaque monkey phylogenetic tree based on data presented by Li et al. [15]

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