Skip to main content

Table 2 Summary of clean reads mapped from MB, FB, MA and FA to the reference genome

From: Transcriptome analysis of genes related to gonad differentiation and development in Muscovy ducks

Sample name

Total reads

Total mapped

Multiple mapped

Uniquely mapped

Reads mapped to ‘+’

Reads mapped to ‘-’

FB1

70,602,322

34,506,109 (48.87%)

593,713 (0.84%)

33,912,396 (48.03%)

17,038,856 (24.13%)

16,873,540 (23.9%)

FB2

58,772,554

29,828,795 (50.75%)

519,611 (0.88%)

29,309,184 (49.87%)

14,715,210 (25.04%)

14,593,974 (24.83%)

FB3

57,157,288

27,739,072 (48.53%)

471,088 (0.82%)

27,267,984 (47.71%)

13,689,588 (23.95%)

13,578,396 (23.76%)

MB1

51,693,516

25,653,470 (49.63%)

426,958 (0.83%)

25,226,512 (48.8%)

12,670,333 (24.51%)

12,556,179 (24.29%)

MB2

59,945,236

30,339,732 (50.61%)

510,473 (0.85%)

29,829,259 (49.76%)

14,955,979 (24.95%)

14,873,280 (24.81%)

MB3

54,592,060

28,392,840 (52.01%)

473,745 (0.87%)

27,919,095 (51.14%)

14,024,427 (25.69%)

13,894,668 (25.45%)

FA1

56,009,556

27,021,161 (48.24%)

493,654 (0.88%)

26,527,507 (47.36%)

13,317,028 (23.78%)

13,210,479 (23.59%)

FA2

48,793,882

24,294,041 (49.79%)

453,668 (0.93%)

23,840,373 (48.86%)

11,963,536 (24.52%)

11,876,837 (24.34%)

FA3

59,329,652

28,914,663 (48.74%)

525,602 (0.89%)

28,389,061 (47.85%)

14,257,697 (24.03%)

14,131,364 (23.82%)

MA1

47,282,572

24,015,491 (50.79%)

433,496 (0.92%)

23,581,995 (49.87%)

11,827,474 (25.01%)

11,754,521 (24.86%)

MA2

57,132,880

30,326,910 (53.08%)

553,848 (0.97%)

29,773,062 (52.11%)

14,950,119 (26.17%)

14,822,943 (25.94%)

MA3

57,142,740

28,317,706 (49.56%)

498,305 (0.87%)

27,819,401 (48.68%)

13,965,413 (24.44%)

13,853,988 (24.24%)