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Table 1 Genome statistics for mollusc genomes

From: Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome

Class

 

Speices

Family

Accession number

Assembly size

Number of scaffolds

Contig N50

Scaffold N50

BUSCOs

No.Proteins

Reference

Bivalvia

**

Anadara broughtonii

Arcidae

PRJNA521075

884,566,040

1026

1,797,717

44,995,656

97.70%

24,045

[4]

 

Argopecten irradians concentricus

Pectinidae

GCA_004382765.1

874,784,041

82,208

63,725

1,246,717

91.00%

25,979

[45]

 

Argopecten irradians irradians

Pectinidae

GCA_004382745.1

835,595,382

111,436

78,654

1,533,165

91.00%

26,777

[45]

 

Bathymodiolus platifrons

Mytilidae

GCA_002080005.1

1,659,280,971

65,664

12,602

343,373

94.40%

33,584

[77]

 

Crassostrea gigas

Ostreidae

GCF_000297895.1

557,735,934

7659

31,239

401,685

94.40%

46,748

[95]

 

Dreissena rostriformis

Dreissenidae

GCA_007657795.1

1,241,703,712

18,514

45,905

131,390

83.30%

37,681

[12]

**

Cyclina sinensis

Veneridae

GCA_012932295.1

903,119,975

187

2,587,078

46,470,132

92.70%

27,564

[90]

 

Limnoperna fortunei

Mytilidae

GCA_003130415.1

1,673,223,206

20,580

32,203

309,123

81.90%

60,717

[85]

 

Mizuhopecten yessoensis

Pectinidae

GCF_002113885.1

987,588,634

82,659

65,014

803,631

95.50%

41,567

[88]

 

Modiolus philippinarum

Mytilidae

GCA_002080025.1

2,629,649,654

74,575

19,700

100,161

84.20%

36,549

[77]

 

Pinctada fucata

Pteriidae

PRJDB2628

815,303,973

29,306

1629

167,048

91.10%

31,477

[82]

**

Pinctada fucata martensii

Pteriidae

GCA_002216045.1

990,984,031

5039

21,518

59,032,463

86.30%

/

[20]

**

Pecten maximus

Pectinidae

GCA_902652985.1

918,306,378

3983

1,258,799

44,824,366

95.50%

67,741

[39]

**

Panopea generosa

Hiatellidae

GCA_902825435.1

942,353,201

18

14,495

57,743,597

66.70%

/

/

 

Ruditapes philippinarum

Veneridae

GCA_009026015.1

1,123,164,463

30,670

29,238

345,005

91.00%

27,652

[94]

 

Saccostrea glomerata

Ostreidae

GCA_003671525.1

788,118,542

10,107

39,800

804,232

92.10%

29,738

[58]

**

Sinonovacula constricta

Pharidae

GCA_007844125.1

1,220,848,272

2450

976,936

65,929,677

91.92%

28,594

[65]

**

Crassostrea virginica

Ostreidae

GCF_002022765.2

684,741,128

11

1,971,208

75,944,018

94.40%

60,213

/

**

Crassostrea hongkongensis

Ostreidae

CNP0000529

610,039,375

660

2,576,225

55,627,392

95.80%

25,675

[61]

**

Magallana hongkongensis

Ostreidae

WFKH00000000

757,928,205

11,926

49,472

72,332,161

94.60%

45,867

This study

 

Mytilus coruscus

Mytilidae

GCA_011752425.1

1,903,825,920

10,484

817,337

898,347

96.44%

42,684

[44]

 

Venustaconcha ellipsiformis

Unionidae

GCA_003401595.1

1,590,012,607

371,427

2813

6657

68.00%

/

[66]

Cephalopoda

 

Euprymna scolopes

Sepiolidae

GCA_004765925.1

5,280,013,996

59,146

3558

3,549,550

97.00%

29,089

[6]

 

Octopus bimaculoides

Octopodidae

GCF_001194135.1

2,338,188,782

151,674

5532

475,182

86.50%

23,994

[2]

**

Octopus sinensis

Octopodidae

GCA_006345805.1

2,719,151,902

13,516

490,217

105,892,736

50.00%

/

[44]

 

Architeuthis dux

Architeuthidae

GCA_006491835.1

3,155,388,500

7276

9000

5,478,336

85.50%

51,225

[23]

Gastropoda

**

Achatina fulica

Achatinidae

PRJNA511624

1,855,883,074

1010

721,038

59,589,303

91.70%

23,726

[30]

**

Achatina immaculata

Achatinidae

GCA_009760885.1

1,653,153,977

563

3,802,429

56,367,627

96.27%

28,702

[45]

 

Anentome helena

Nassariidae

WUUA000000000.1

1,720,191,841

2,637,315

56,088

2,075,175

/

/

/

 

Biomphalaria glabrata

Planorbidae

GCF_000457365.1

916,388,084

331,401

7298

48,059

87.70%

36,675

[3]

 

Elysia chlorotica

Plakobranchidae

GCA_003991915.1

557,480,303

9989

441,954

30,474

93.30%

24,980

[11]

 

Haliotis discus

Haliotidae

PRJNA317403

1,865,475,499

80,032

41,000

200,099

90.70%

29,449

[56]

 

Haliotis laevigata

Haliotidae

GCA_008038995.1

1,762,655,385

105,411

3353

81,233

84.56%

55,164

[8]

 

Haliotis rufescens

Haliotidae

GCA_003343065.1

1,498,703,277

8371

283,651

1,895,871

95.10%

57,785

[51]

 

Haliotis rubra

Haliotidae

GCA_003918875.1

1,378,265,264

2854

1,177,711

1,227,833

94.60%

44,137

[28]

 

Lanistes nyassanus

Ampullariidae

GCA_004794575.1

507,389,202

17,149

25,785

317,839

96.30%

20,938

[78]

 

Lottia gigantea

Lottiidae

GCF_000327385.1

359,505,668

4469

96,027

1,870,055

94.40%

23,822

[76]

 

Limacina bulimoides

Limacinidae

SWLX000000000.1

2,901,939,372

3,735,750

884

893

30.30%

/

[19]

 

Marisa cornuarietis

Ampullariidae

GCA_004794655.1

535,287,142

659

4,359,112

4,359,112

98.20%

23,827

[78]

**

Pomacea canaliculata

Ampullariidae

GCF_003073045.1

440,159,624

24

1,072,857

31,531,291

94.40%

40,391

[47]

 

Pomacea maculata

Ampullariidae

GCA_004794325.1

432,264,763

3908

75,997

375,864

96.40%

23,475

[78]

**

Chrysomallon squamiferum

Peltospiridae

GCA_012295275.1

404,615,235

22

1,880,000

30,197,626

96.60%

16,917

[79]

 

Radix auricularia

Lymnaeidae

GCA_002072015.1

909,764,068

4823

24,354

578,730

93.40%

17,338

[80]

  1. **Chromosome level assembly