Table 3 Genes within the strong associated SNPs region
From: Identification of miRNA-eQTLs in maize mature leaf by GWAS
miRNA | SNP | p-value | Chra | Gene ID | Maize annotation | Arabidopsis hit | Arabidopsis orthology | Rice hit | Rice orthology |
|---|---|---|---|---|---|---|---|---|---|
miR156k-5p | S6_95875558 | 3.45E-09 | 6 | GRMZM2G049730 | hagtf27-GNAT-transcription factor 27 | AT4G37580.1 | NAT superfamily protein | LOC_Os06g44100.1 | HLS putative |
S6_96005268 | 4.01E-10 | 6 | GRMZM2G014119 | ubi3-ubiquitin3 | AT1G31340.1 | related to ubiquitin 1 | LOC_Os09g25320.1 | ubiquitin family protein | |
S6_96007934 | 1.25E-07 | 6 | GRMZM2G326734 | NON | NON | Â | LOC_Os06g44060.1 | phospholipase D. Active site motif family | |
S6_96096148 | 6.49E-11 | 6 | GRMZM2G171317 | dmag1 - DNA-3-methyladenine glycosylase1 | AT5G57970.1 | DNA glycosylase superfamily protein | LOC_Os06g44050.1 | methyladenine glycosylase | |
S6_96103728 | 2.93E-11 | 6 | GRMZM2G171328 | NON | AG5G54830.1 | DOMON domain / dopamine beta-monooxygenase N-terminal | LOC_Os06g44040.1 | DOMON domain | |
S6_96289445 | 2.81E-10 | 6 | GRMZM5G806818 | NON | NON | NON | NON | NON | |
S6_96349269 | 3.03E-11 | 6 | AC233936.1_FG003 | NON | AT5G25150.1 | (TAF5) TBP-associated factor 5 | LOC_Os06g44030.2 | WD domain G-beta repeat domain | |
S6_96352871 | 4.94E-11 | 6 | AC208711.3_FG005 | NON | NON | Â | LOC_Os08g09890.1 | Expressed protein | |
miR390a-5p | S5_2799777 | 2.083259e-10 | 5 | GRMZM2G108694 | NON | AT2G47430.1 | (CKI1) Signal transduction histidine kinase | LOC_Os06g08450.1 | histidine kinase putative expressed |
miR396e-5p | S5_214385721 | 1.69E-10 | 5 | GRMZM2G027282 | NON | AT3G05530.1 | (ATS6A.2, RPT5A) regulatory particle triple-A ATPase 5A | LOC_Os06g07630.1 | 26S protease regulatory subunit 6A |