Table 4 Regions identified as ATAC-seq peaks in both biological replicates of pig, cattle, and mouse tissues. To obtain a single comprehensive set of “consensus” ATAC-seq peaks for each species, regions that were identified as peaks in both biological replicates for each tissue were collapsed, such that any overlapping peaks were merged into a single unique interval
From: A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues
Pig | Cattle | Mouse | ||||
|---|---|---|---|---|---|---|
Tissue | Peaks in both replicates | Average size (bp) | Peaks in both replicates | Average size (bp) | Peaks in both replicates | Average size (bp) |
Adipose | 4785 | 373.583 | 38,745 | 501.575 | 64,008 | 633.770 |
Cerebellum | 134,086 | 555.921 | 93,927 | 535.284 | 57,771 | 618.660 |
Brain Cortex | 104,272 | 515.209 | 75,762 | 465.855 | 149,223 | 604.979 |
Hypothalamus | 63,736 | 514.036 | 20,045 | 415.089 | – | – |
Liver | 78,841 | 498.528 | 58,853 | 482.561 | 90,228 | 679.330 |
Lung | 115,491 | 569.537 | 169,734 | 619.450 | 76,168 | 652.975 |
Muscle | 93,550 | 698.708 | 77,378 | 566.262 | 22,003 | 514.762 |
Spleen | 64,667 | 560.972 | 79,960 | 542.832 | 35,278 | 601.650 |
Consensus (collapsed set) | 306,304 | 623.608 | 273,594 | 616.064 | 254,076 | 668.062 |