Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus

Table 2 Comparison of RNA-seq read alignability

*P. pacificus* RNA-seq samples		Successfully assigned alignments (%)		Reference
Accession	Description	V2	V3	Reference
ERR777792	Mixed-stage on E. coli OP50	74.8	76.8	[13]
ERR777793	Mixed-stage on E. coli OP50	74.9	76.6	[13]
ERR777794	Mixed-stage on E. coli OP50	74.4	76.1	[13]
SRR4017216	Adults on E. coli OP50	79.8	81.7	[34]
SRR4017217	Adults on E. coli OP50	80.3	82.2	[34]
SRR4017218	Adults on Cryptococcus C3	79.6	81.6	[34]
SRR4017219	Adults on Cryptococcus C3	79.2	81.1	[34]
SRR4017220	Adults on Cryptococcus C5	79.9	81.8	[34]
SRR4017221	Adults on Cryptococcus C5	80.7	82.6	[34]
ERR3421261	Adults on E. coli OP50	79.7	81.6	[9]
ERR3421262	Adults on E. coli OP50	79.5	81.3	[9]
ERR3421263	Adults on Novosphingobium L76	79.6	81.5	[9]
ERR3421264	Adults on Novosphingobium L76	79.5	81.5	[9]
SRR2142256	Adults on E. coli OP50	77.8	79.8	[35]
SRR2142257	Intestines	72.5	74.2	[35]

The table shows the percentage of assigned reads from 15 RNA-seq experiments for different P. pacificus gene annotations

ISSN: 1471-2164