Approach scenario description | n | Total SNPs before filtering | Total SNPs after filtering | Percentage of SNPs passing all filters (%) |
---|---|---|---|---|
Approach i) non-merged samples | ||||
Liver tissue | 6 | 626,460 | 258,120 | 41.20 |
Muscle tissue | 6 | 940,143 | 396,705 | 42.20 |
Liver and Muscle tissue | 12 | 1,205,664 | 511,092 | 42.39 |
Approach ii) merged samples by RFI group | ||||
Liver tissue | 6 | 521,588 | 197,309 | 37.82 |
Muscle tissue | 6 | 770,685 | 296,169 | 38.43 |
Liver and Muscle tissue | 12 | 1,005,696 | 388,322 | 38.61 |
Approach iii) merged samples by RFI and tissue group | ||||
Liver and Muscle tissue | 12 | 1,048,370 | 416,216 | 39.70 |