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Fig. 4 | BMC Genomics

Fig. 4

From: RNA-Seq and differential gene expression analysis in Temora stylifera copepod females with contrasting non-feeding nauplii survival rates: an environmental transcriptomics study

Fig. 4

Heat-maps of differentially expressed sequences expressed as log-transformed raw counts. Euclidean distance was considered as distance measure and variables were clustered on the basis of the complete-linkage method. Numbers near the dendrogram of variables (R-mode) describe the main clusters identified for sequences. Cluster position of the selected differentially expressed unigenes and isoforms used for transcriptome validation is indicated. Dendrograms on the top of the heat-maps describe grouping of samples on the basis of complete-linkage clustering method (Q-mode). Data refer to the three replicates of wild Temora stylifera collected on the 30th of May 2017 and the 23rd of May. Heat-maps at the top show raw counts of differentially expressed unigenes (DE unigenes) and isoforms (DE isoforms). Heat-maps at the bottom display log-transformed raw counts of A5 Odorant binding proteins (DE A5-Obp iso) isoforms and isoforms annotated as sequences involved in reproduction and development (DE Repr & Dev iso)

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BMC Genomics

ISSN: 1471-2164

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