RNA-Seq and differential gene expression analysis in Temora stylifera copepod females with contrasting non-feeding nauplii survival rates: an environmental transcriptomics study

Russo, Ennio; Lauritano, Chiara; d’Ippolito, Giuliana; Fontana, Angelo; Sarno, Diana; von Elert, Eric; Ianora, Adrianna; Carotenuto, Ylenia

doi:10.1186/s12864-020-07112-w

Table 2 Temora stylifera differentially expressed unigenes

From: RNA-Seq and differential gene expression analysis in Temora stylifera copepod females with contrasting non-feeding nauplii survival rates: an environmental transcriptomics study

*Trinity ID number identifier*	*Length (bp)*	*log₂-FC*	*p-adj*	*Description*	*GO IDs*
TRINITY_DN48953_c0_g1_i2	1109	−9.92	4.71⁻⁰⁶	---NA---
TRINITY_DN56306_c2_g1_i2	338	−7.09	0.0003	putative odorant-binding protein A5
TRINITY_DN46479_c0_g2_i1	490	−6.06	0.02	TPA: hypothetical protein BOS_23229
TRINITY_DN54322_c1_g1_i1	202	−5.18	0.01	OV-16 antigen-like
TRINITY_DN56306_c3_g2_i2	262	−5.03	3.46⁻¹⁷	---NA---
TRINITY_DN56306_c2_g2_i1	231	−4.78	1.69⁻⁰⁸	putative odorant-binding protein A5
TRINITY_DN56306_c0_g1_i1	279	−4.75	2.76⁻¹⁶	protein D3
TRINITY_DN47252_c1_g3_i1	576	−4.60	0.01	collagen alpha-1(I) chain-like
TRINITY_DN56306_c3_g1_i4	532	−4.50	1.30⁻¹⁴	putative odorant-binding protein A5
TRINITY_DN44842_c0_g1_i2	513	−4.45	0.04	collagen alpha-1(I) chain-like
TRINITY_DN59703_c3_g3_i1	328	−4.42	6.63⁻¹⁰	---NA---
TRINITY_DN54322_c1_g2_i5	363	−4.29	0.001	protein D2
TRINITY_DN40295_c1_g1_i1	287	−4.03	0.01	protein GVQW1-like
TRINITY_DN57986_c1_g1_i2	211	−3.8	0.04	alpha-l1 nicotinic acetyl choline receptor
TRINITY_DN51020_c2_g1_i1	774	− 3.76	0.03	---NA---
TRINITY_DN47801_c76_g1_i1	255	−3.73	0.02	---NA---
TRINITY_DN50358_c0_g1_i2	1964	−3.71	0.001	serine/threonine protein phosphatase Ppa2	F:GO:0016787
TRINITY_DN50277_c3_g1_i11	635	−3.51	0.003	hypothetical protein
TRINITY_DN48256_c0_g1_i2	655	−3.39	0.02	cell wall-associated hydrolase
TRINITY_DN47115_c1_g1_i13	430	−3.32	0.03	cell wall-associated hydrolase	F:GO:0016787
TRINITY_DN56650_c0_g2_i1	2126	−3.29	2.83⁻⁰⁸	uncharacterized protein LOC111708691
TRINITY_DN48918_c10_g1_i1	214	−3.13	0.0009	putative odorant-binding protein A5
TRINITY_DN42279_c0_g1_i1	359	−3.03	2.61⁻⁰⁵	collagen-like protein
TRINITY_DN41737_c0_g1_i1	478	−2.95	0.01	---NA---
TRINITY_DN42313_c0_g1_i4	230	−2.93	4.87⁻¹⁴	---NA---
TRINITY_DN48948_c2_g1_i1	220	−2.85	3.64⁻⁰⁶	putative odorant-binding protein A5
TRINITY_DN48918_c8_g1_i1	223	−2.82	0.0006	39S ribosomal protein L38, mitochondrial
TRINITY_DN59703_c2_g3_i1	286	−2.81	1.92⁻¹²	---NA---
TRINITY_DN48067_c0_g1_i1	220	−2.81	3.34⁻⁰⁹	uncharacterized protein LOC111712488 isoform X2
TRINITY_DN59703_c2_g1_i2	335	−2.8	3.46⁻¹⁷	putative odorant-binding protein A5
TRINITY_DN59703_c3_g1_i1	279	−2.79	1.82⁻¹⁴	---NA---
TRINITY_DN50915_c1_g1_i13	1031	−2.78	0.04	IS1 transposase InsAB
TRINITY_DN52417_c2_g3_i22	1136	−2.77	0.01	conserved hypothetical protein
TRINITY_DN59703_c2_g2_i1	239	−2.68	6.39⁻⁰⁶	protein D2-like
TRINITY_DN48788_c0_g2_i4	1921	−2.68	0.009	dentin sialophosphoprotein isoform X2
TRINITY_DN46462_c2_g1_i1	271	−2.6	6.82⁻⁰⁷	---NA---
TRINITY_DN48918_c6_g2_i2	368	−2.64	6.82⁻⁰⁷	---NA---
TRINITY_DN51686_c3_g3_i2	821	−2.63	0.01	---NA---
TRINITY_DN46462_c2_g2_i3	229	−2.62	7.97⁻⁰⁵	OV-16 antigen-like
TRINITY_DN51574_c1_g2_i3	2092	−2.60	0.04	23S rRNA (guanosine(2251)-2′-O)-methyltransferase RlmB
TRINITY_DN48918_c11_g1_i1	229	−2.55	0.01	OV-16 antigen-like
TRINITY_DN52057_c0_g1_i2	1042	−2.54	0.0001	---NA---
TRINITY_DN56306_c1_g1_i2	347	−2.53	8.91⁻⁰⁷	OV-16 antigen-like
TRINITY_DN48918_c5_g1_i2	287	−2.53	3.50⁻⁰⁷	putative odorant-binding protein A5
TRINITY_DN48918_c6_g1_i2	327	−2.53	6.98⁻⁰⁷	OV-16 antigen-like
TRINITY_DN48948_c0_g1_i1	202	−2.52	0.01	OV-16 antigen-like
TRINITY_DN54592_c0_g1_i1	1761	−2.5	0.003	uncharacterized protein LOC111700481
TRINITY_DN50660_c0_g2_i1	298	−2.44	0.03	---NA---
TRINITY_DN43949_c0_g2_i2	213	−2.44	0.001	---NA---
TRINITY_DN48948_c1_g2_i1	216	−2.39	0.0007	putative odorant-binding protein A5
TRINITY_DN50660_c0_g1_i2	1041	−2.36	6.85⁻⁰⁶	protein D3
TRINITY_DN45228_c5_g1_i1	273	−2.36	2.47⁻⁰⁵	---NA---
TRINITY_DN53544_c0_g3_i2	1498	−2.34	0.01	altered inheritance of mitochondria protein 3-like
TRINITY_DN48948_c1_g1_i17	315	−2.32	3.64⁻⁰⁶	---NA---
TRINITY_DN44278_c0_g1_i1	204	−2.3	0.03	cytochrome c oxidase subunit I (mitochondrion)	F:GO:0004129; C:GO:0005743; P:GO:0006123; P:GO:0009060; C:GO:0016021; F:GO:0020037; C:GO:0045277; F:GO:0046872; P:GO:1902600; P:GO:1902600
TRINITY_DN60327_c0_g1_i1	239	−2.22	0.02	---NA---
TRINITY_DN38350_c0_g1_i1	250	−2.19	0.008	collagen alpha-1(XI) chain-like	F:GO:0005201; C:GO:0031012
TRINITY_DN60534_c0_g1_i3	490	−2.16	0.02	---NA---
TRINITY_DN48918_c5_g2_i1	367	−2.13	3.37⁻⁰⁶	protein D3
TRINITY_DN48918_c10_g1_i1	214	−2.05	0.0009	sequestosome-1-like
TRINITY_DN43949_c3_g1_i1	201	−2.04	0.01	---NA---
TRINITY_DN46002_c0_g1_i1	370	−2.03	0.001	cAMP-responsive element-binding protein-like 2	F:GO:0003700; C:GO:0005667; P:GO:0006355; P:GO:0006355
TRINITY_DN55139_c4_g1_i3	305	−1.95	0.0006	---NA---
TRINITY_DN53118_c0_g1_i2	1123	−1.95	0.0004	cytochrome b5-like	F:GO:0020037
TRINITY_DN46104_c2_g1_i22	715	−1.94	0.03	hypothetical protein T11_14937
TRINITY_DN59998_c0_g2_i5	1026	−1.88	0.02	uncharacterized protein LOC111714070
TRINITY_DN48367_c6_g8_i1	224	−1.86	0.04	malate dehydrogenase, mitochondrial	F:GO:0016491; P:GO:0055114
TRINITY_DN50562_c0_g1_i4	930	−1.86	0.002	cytochrome P450 2C9-like	F:GO:0005506; F:GO:0016705; F:GO:0020037; P:GO:0055114
TRINITY_DN55139_c4_g2_i1	254	−1.84	0.003	---NA---
TRINITY_DN43949_c1_g1_i1	243	−1.83	0.0006	---NA---
TRINITY_DN48564_c3_g1_i5	290	−1.79	0.02	---NA---
TRINITY_DN61944_c3_g2_i1	569	−1.78	0.03	DNA ligase 1-like isoform X2
TRINITY_DN58322_c1_g1_i3	335	−1.76	0.01	heat shock protein 70
TRINITY_DN60002_c1_g1_i1	2425	−1.75	0.001	ariadne protein
TRINITY_DN53340_c0_g1_i1	1921	−1.75	0.003	Leukocyte receptor cluster member 9	F:GO:0046872
TRINITY_DN55139_c4_g3_i1	236	−1.74	0.03	---NA---
TRINITY_DN50562_c0_g2_i2	866	−1.74	0.002	cytochrome P450 CYP3034A1	F:GO:0005506; F:GO:0016705; F:GO:0020037; P:GO:0055114
TRINITY_DN58203_c2_g2_i3	1411	−1.7	0.03	---NA---
TRINITY_DN44347_c0_g1_i1	2339	−1.7	7.72⁻⁰⁶	Carboxylic ester hydrolase
TRINITY_DN59831_c1_g3_i3	1224	−1.7	0.04	sterile alpha and TIR motif-containing protein 1 isoform X1	F:GO:0005515
TRINITY_DN51606_c3_g1_i1	201	−1.67	0.04	heat shock protein beta-1
TRINITY_DN46142_c0_g1_i1	228	−1.62	9.03⁻⁰⁵	peritrophins 3-A1 precursor	C:GO:0005576; P:GO:0006030; F:GO:0008061
TRINITY_DN49225_c2_g1_i3	356	−1.54	0.02	---NA---
TRINITY_DN54543_c0_g1_i1	244	−1.54	0.007	peroxidase, putative
TRINITY_DN45036_c0_g1_i4	818	−1.53	0.003	---NA---
TRINITY_DN60327_c0_g3_i1	431	−1.53	0.02	e3 ubiquitin-protein ligase Mdm2-like isoform X1
TRINITY_DN55139_c3_g1_i1	281	−1.52	0.005	---NA---
TRINITY_DN61324_c6_g2_i2	221	−1.48	0.02	arylsulfatase B-like
TRINITY_DN37862_c0_g1_i2	292	−1.45	0.04	arylsulfatase B-like	F:GO:0003824; P:GO:0008152
TRINITY_DN46682_c4_g1_i3	247	−1.4	0.01	ubiquitin	F:GO:0005515
TRINITY_DN55897_c0_g1_i1	2619	−1.37	0.007	sodium-dependent nutrient amino acid transporter 1-like	F:GO:0005328; P:GO:0006812; P:GO:0006836; C:GO:0016021
TRINITY_DN58435_c6_g2_i2	1086	−1.36	0.009	---NA---
TRINITY_DN51606_c2_g1_i1	204	−1.32	0.03	heat shock protein beta-1-like
TRINITY_DN57765_c0_g1_i1	850	−1.32	0.03	---NA---
TRINITY_DN49317_c3_g1_i1	1068	−1.31	0.0008	Kelch-like protein 12	F:GO:0005515
TRINITY_DN51502_c2_g2_i2	599	−1.3	0.009	heat shock protein 70 B2	F:GO:0005524
TRINITY_DN57961_c5_g1_i1	370	−1.3	0.03	heat shock protein beta-1
TRINITY_DN48866_c0_g1_i4	425	−1.29	0.03	uncharacterized protein LOC111717104
TRINITY_DN61324_c6_g3_i3	552	−1.28	0.002	arylsulfatase B-like	F:GO:0003824; P:GO:0008152
TRINITY_DN61324_c6_g1_i1	1130	−1.28	0.003	arylsulfatase B-like	P:GO:0008152; F:GO:0008484
TRINITY_DN50806_c1_g2_i4	2085	−1.26	0.02	phosphatidylserine decarboxylase proenzyme, mitochondrial-like	F:GO:0004609; P:GO:0006544; P:GO:0006563; P:GO:0006566; P:GO:0008654; P:GO:0046486
TRINITY_DN46430_c2_g2_i2	627	−1.24	0.02	heat shock 70 kDa protein 1-like	F:GO:0005524
TRINITY_DN57961_c4_g1_i7	288	−1.19	0.03	heat shock protein beta-1
TRINITY_DN51606_c1_g1_i7	760	−1.18	0.04	heat shock protein beta-1-like
TRINITY_DN54808_c0_g1_i1	1258	−1.14	0.03	arginine kinase	F:GO:0016301
TRINITY_DN56814_c0_g1_i3	876	−1.13	0.004	arylsulfatase B-like	P:GO:0008152; F:GO:0008484
TRINITY_DN56639_c0_g1_i2	3248	−1.05	0.03	protein unc-45 homolog B	F:GO:0005515
TRINITY_DN59770_c0_g1_i1	2702	−0.96	0.01	solute carrier organic anion transporter family member 2A1	F:GO:0005215; F:GO:0005515; C:GO:0016020; P:GO:0055085
TRINITY_DN48929_c1_g2_i2	232	0.99	0.01	---NA---
TRINITY_DN48585_c5_g2_i2	267	1.01	0.0008	---NA---
TRINITY_DN50261_c1_g1_i4	259	1.07	0.01	---NA---
TRINITY_DN46130_c0_g2_i2	257	1.07	0.01	transforming growth factor-beta-induced protein ig-h3-like
TRINITY_DN58926_c0_g1_i1	2210	1.11	0.005	organic cation transporter protein-like	C:GO:0016021; F:GO:0022857; P:GO:0055085
TRINITY_DN47352_c0_g1_i11	566	1.11	0.002	uncharacterized protein LOC111697309	F:GO:0005506
TRINITY_DN44753_c2_g1_i8	282	1.13	0.003	---NA---
TRINITY_DN46080_c1_g2_i1	298	1.23	0.003	---NA---
TRINITY_DN47755_c1_g1_i2	231	1.34	0.001	---NA---
TRINITY_DN39167_c0_g1_i1	458	1.43	0.03	vitellogenin receptor
TRINITY_DN49031_c4_g1_i1	214	1.44	0.002	---NA---
TRINITY_DN56235_c0_g1_i2	867	1.5	0.002	facilitated trehalose transporter Tret1-like	C:GO:0016021; F:GO:0022857; P:GO:0055085
TRINITY_DN48929_c1_g1_i1	272	1.57	0.0004	---NA---
TRINITY_DN53823_c0_g4_i3	1704	1.58	0.01	Facilitated trehalose transporter Tret1	C:GO:0016021; F:GO:0022857; P:GO:0055085
TRINITY_DN50724_c4_g1_i1	259	1.68	0.003	---NA---
TRINITY_DN47273_c4_g1_i1	201	1.77	0.002	---NA---
TRINITY_DN47638_c5_g1_i1	269	2.09	0.004	---NA---
TRINITY_DN46792_c0_g1_i13	419	2.15	0.001	---NA---
TRINITY_DN48936_c0_g1_i1	2363	2.16	0.003	uncharacterized protein LOC111698428
TRINITY_DN46832_c5_g1_i3	221	2.24	0.04	---NA---
TRINITY_DN46134_c9_g2_i1	368	2.34	0.01	---NA---
TRINITY_DN44649_c1_g3_i4	295	2.42	6.52⁻¹⁰	---NA---
TRINITY_DN48983_c0_g1_i1	2068	2.61	0.03	uncharacterized protein LOC111696662
TRINITY_DN47725_c0_g1_i1	324	2.75	0.01	---NA---
TRINITY_DN57759_c4_g3_i1	224	3.11	2.36e-07	---NA---
TRINITY_DN43876_c0_g1_i1	848	3.42	1.39⁻⁰⁶	---NA---
TRINITY_DN26125_c0_g1_i1	1469	3.55	0.02	probable serine/threonine-protein kinase samkA
TRINITY_DN47135_c3_g1_i7	240	3.57	3.94⁻⁰⁸	---NA---
TRINITY_DN41595_c0_g1_i1	1708	3.63	0.02	uncharacterized protein LOC111704026 isoform X2
TRINITY_DN44116_c1_g1_i1	1536	3.76	0.0003	neuronal acetylcholine receptor subunit alpha-10-like isoform X1	F:GO:0004888; F:GO:0005230; P:GO:0007165; C:GO:0016021; P:GO:0034220
TRINITY_DN54042_c0_g1_i1	2084	4.07	0.01	---NA---
TRINITY_DN57931_c1_g6_i1	814	5.11	0.01	N-acylglucosamine 2-epimerase
TRINITY_DN40267_c0_g1_i2	261	5.41	0.003	putative ATP-dependent RNA helicase me31b	F:GO:0003676; F:GO:0005524
TRINITY_DN52242_c0_g2_i2	1016	6.73	1.32⁻⁰⁹	---NA---
TRINITY_DN52242_c0_g1_i3	312	7.13	0.0003	---NA---
TRINITY_DN49250_c2_g3_i1	201	8.75	0.01	---NA---

Trinity ID number with predicted gene and isoform identifiers, length (bp), log₂-Fold-Change (log₂-FC), adjusted p-value (p-adj) of statistical analysis (FDR) for each predicted genes, sequence description and functional annotation as provided by Blast2Go for the longest isoform. Unigenes are listed from the most down-regulated to the most up-regulated one, as indicated by log₂-FC

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