Table 1 Overview of the transcriptome sequencing dataset and quality check
Samples | Raw Reads | Clean Reads | Q30 (%) | GC Content (%) |
|---|---|---|---|---|
GW-peel-1 | 55,701,582 | 54,624,648 | 94.5 | 50.89 |
GW-peel-2 | 51,972,514 | 50,955,940 | 93.74 | 50.69 |
GW-peel-3 | 52,503,168 | 51,336,002 | 94.33 | 50.63 |
GW-pulp-1 | 52,995,520 | 49,937,440 | 94.62 | 50.49 |
GW-pulp-2 | 60,780,458 | 56,622,586 | 94.41 | 50.93 |
GW-pulp-3 | 57,923,082 | 55,294,992 | 94.48 | 50.73 |
RR-peel-1 | 46,688,418 | 45,033,096 | 93.89 | 48.47 |
RR-peel-2 | 57,849,830 | 56,017,310 | 93.62 | 48.91 |
RR-peel-3 | 54,541,504 | 52,646,804 | 94.25 | 48.61 |
RR-pulp-1 | 50,555,020 | 48,714,322 | 94.1 | 49.43 |
RR-pulp-2 | 50,648,636 | 49,387,298 | 93.46 | 49.05 |
RR-pulp-3 | 53,741,688 | 52,386,128 | 93.92 | 49.61 |
YW-peel-1 | 55,656,600 | 53,925,590 | 94.08 | 50.58 |
YW-peel-2 | 53,519,622 | 51,785,646 | 94.07 | 50.57 |
YW-peel-3 | 58,784,674 | 57,361,112 | 94.54 | 50.42 |
YW-pulp-1 | 62,038,332 | 60,311,044 | 93.8 | 50.29 |
YW-pulp-2 | 47,545,250 | 45,812,386 | 94.34 | 50.55 |
YW-pulp-3 | 51,126,568 | 48,809,534 | 93.79 | 50.3 |