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Fig. 3 | BMC Genomics

Fig. 3

From: Genomic differences between the new Fusarium oxysporum f. sp. apii (Foa) race 4 on celery, the less virulent Foa races 2 and 3, and the avirulent on celery f. sp. coriandrii

Fig. 3

Coverage of Foa race 4 (FoaR4) and Foci 3–2 reference assemblies by Illumina reads from Foa and Foci strains. From each of the five strains, 6.5 Gbp (~100x coverage) of quality-filtered Illumina reads of each strain were mapped onto the Foa race 4 (a) and Foci 3–2 (b) reference assemblies. We calculated the proportion of coverage of each 10 kbp window in the reference assemblies. Here, only contigs with length greater than 150 kbp are shown, and are separated by vertical black lines. The darkest green sections of the histogram have a 100% coverage and the reddest sections have coverage close to 0%. Coverage of 0.5 (yellow) indicates that only 5 kbp of the 10 kbp segment had Illumina coverage. Contigs corresponding to core chromosomes are labeled above each plot. The IDs for contigs (Ctg) and scaffolds (Scf) that are associated with host specificity are lettered in red, below the plots. Each row corresponds to coverage from a single isolate, which is noted to the right of the graph (Foa race 2, FoaR2; Foa race 3, FoaR3). Additional files 8-9 have the quantification of the extent of Illumina-read coverage of each strain for each reference contig

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