Table 2 Table summarising repeat content in the E. tetradactylum genome, detailing the number of elements, overall length, and genomic proportion, for each major repeat type, for a standard RepeatMasker analysis (left) and a custom annotation approach (right, see methods for details)
From: Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae)
Repeat Class | Traditional Repeat Annotation (RepeatMasker) | Refined Conservative Repeat Annotation | ||||
|---|---|---|---|---|---|---|
No. elements | Total Length (Mb) | Percentage sequence (%) | No. elements | Total Length (Mb) | Percentage sequence (%) | |
Retroelement | 155419 | 19.14 | 3.14 | 150453 | 21.92 | 3.59 |
SINE | 13534 | 1.46 | 0.24 | 12936 | 1.63 | 0.27 |
LINE | 60949 | 11.49 | 1.88 | 60294 | 12.18 | 1.99 |
LTR element | 80936 | 6.19 | 1.01 | 77223 | 8.11 | 1.33 |
DNA transposon | 298755 | 26.04 | 4.27 | 276340 | 32.42 | 5.31 |
Rolling-circle | 15702 | 1.28 | 0.21 | 15557 | 2.05 | 0.34 |
Unclassified | 32821 | 7.88 | 1.29 | 29890 | 7.80 | 1.28 |
Other | 11396 | 1.00 | 0.16 | 19703 | 2.40 | 0.39 |
Total repeats | 514093 | 55.34 | 9.07 | 491943 | 66.59 | 10.91 |