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Table 2 The expected runtime of predicting binding sites of a specific RBP on a linear RNA and a circRNA using RBPsuite for sequences with different lengths

From: RBPsuite: RNA-protein binding sites prediction suite based on deep learning

RNA type

Sequence length

Time(s)

Linear RNA

1000

5.62

10,000

15.43

100,000

115.59

circRNA

1000

9.07

10,000

9.79

100,000

20.26