Table 4 Number of lineage-specific SNP and indel variants along chromosomes

Sugar Beet

EL10

1

91

170

103

114

96

229

147

95

104

138

C86925

2

680

562

1,547

933

2,365

1,101

482

1,316

528

1,057

EL50

3

1,482

1,496

5,328

2,414

5,141

4,722

3,356

4,244

2,529

3,412

EL51

4

978

2,436

1,852

1,830

2,019

3,361

1,825

1,772

1,391

1,940

GP10

5

398

787

964

642

776

2,376

1,331

1,116

661

1,006

GP9

6

491

521

864

1,023

892

1,839

821

1,028

510

888

L19

7

568

1,248

993

4,438

845

5,175

3,374

1,918

1,379

2,215

SP7322

8

467

1,190

1,696

2,026

1,475

4,125

1,906

1,601

1,042

1,725

SR102

9

406

683

1,081

1,115

1,000

1,458

1,021

1,368

633

974

SR98

10

419

1,356

1,364

2,056

3,158

3,757

1,423

1,691

1,017

1,805

Table Beet

BBTB

11

17,632

10,425

8,148

9,559

12,067

9,383

4,597

6,131

10,187

9,792

Crosby

12

2,210

1,172

2,772

2,584

2,511

3,857

2,470

2,548

1,758

2,431

DDRT

13

2,175

1,314

2,874

3,007

1,776

4,559

4,431

2,195

1,849

2,687

RQ

14

3,186

3,402

3,680

2,937

4,053

5,349

3,356

3,691

2,132

3,532

TG

15

3,014

8,486

3,732

3,625

2,971

4,290

3,988

3,716

3,391

4,135

W357B

16

7,806

4,186

7,661

6,766

16,835

2,011

8,723

5,947

2,102

6,893

WT

17

3,347

1,577

3,508

4,084

2,777

4,790

3,203

4,876

2,209

3,375

Fodder Beet

MAM

18

698

1,014

885

1,628

1,758

2,820

1,044

1,030

1,092

1,330

WGF

19

1,014

2,074

4,929

2,468

4,923

4,288

2,041

1,886

1,587

2,801

Chard

FGSC

20

2,883

3,738

2,480

4,665

3,768

4,286

4,181

3,224

2,539

3,529

LUC

21

2,615

3,570

3,269

3,376

4,834

7,489

4,063

3,118

2,763

3,900

RHU

22

2,631

2,996

2,249

3,421

2,649

5,019

2,872

3,880

3,372

3,232

Vulcan

23

3,662

3,977

3,694

4,243

3,343

5,800

3,841

5,054

3,442

4,117

 mean

2,558

2,538

2,855

2,998

3,566

4,003

2,804

2,758

2,096

Crop Types

Sugar (Entries 1-10)

193

178

2,511

57

71

90

28

990

99

469

Table (Entries 11-17)

307

53

469

79

292

121

34

528

54

215

Fodder (Entries 18-19)

69

64

74

49

206

164

41

52

129

94

Chard (Entries 20-23)

204

826

383

242

610

335

104

660

295

407

 mean

193

280

859

107

295

178

52

558

144