Table 2 A table is shown reflecting all of the significantly enriched GO terms from the gene groups produced from either the Fuzzy C-means clustering or the Top 500 most highly expressed genes in each sample. For each GO term, supporting information is provided such as the Gene Group from which it was identified the Code name, False discovery rate and information about how many genes with this term were identified compared to the total number in the transcriptome
Gene Group | Code Name | False Discovery Rate | # of Genes in Group with Term | # of Genes in Transcriptome with Term | GO Term Annotation |
|---|---|---|---|---|---|
Continual_increase_fuzzycluster | PF13909 | 0.000130095 | 23 | 189 | C2H2-type zinc-finger domain |
Continual_increase_fuzzycluster | GO:0003676 | 0.000187859 | 69 | 1115 | nucleic acid binding, molecular_function |
M1_fuzzycluster | GO:0006412 | 1.39345E-06 | 52 | 548 | translation, biological_process |
M1_fuzzycluster | PF02958 | 1.62758E-06 | 19 | 85 | Ecdysteroid kinase |
M1_fuzzycluster | PF00112 | 0.000255183 | 17 | 110 | Papain family cysteine protease |
M1_fuzzycluster | PF00504 | 0.000255183 | 11 | 43 | Chlorophyll A-B binding protein |
M1_fuzzycluster | GO:0008234 | 0.000504127 | 17 | 121 | cysteine-type peptidase activity, molecular_function |
M1_fuzzycluster | GO:0006414 | 0.000780785 | 11 | 56 | translational elongation, biological_process |
M1_Top 500 | PF00112 | 1.58324E-11 | 19 | 110 | Papain family cysteine protease |
M1_Top 500 | GO:0008234 | 2.43945E-11 | 19 | 121 | cysteine-type peptidase activity, molecular_function |
M1_Top 500 | PF00135 | 1.63518E-08 | 15 | 100 | Carboxylesterase family |
M1_Top 500 | PF02958 | 1.13244E-06 | 12 | 85 | Ecdysteroid kinase |
M1_Top 500 | PF00067 | 4.40651E-06 | 14 | 146 | Cytochrome P450 |
M1_Top 500 | GO:0055114 | 0.000163275 | 37 | 1078 | oxidation-reduction process, biological_process |
M1_Top 500 | GO:0006508 | 0.000818748 | 18 | 394 | proteolysis, biological_process |
M2_fuzzycluster | PF00112 | 5.48524E-05 | 11 | 110 | Papain family cysteine protease |
M2_fuzzycluster | GO:0008234 | 0.000114662 | 11 | 121 | cysteine-type peptidase activity, molecular_function |
M2_Top 500 | GO:0055114 | 3.88423E-08 | 53 | 1078 | oxidation-reduction process, biological_process |
M2_Top 500 | PF00112 | 2.93311E-07 | 15 | 110 | Papain family cysteine protease |
M2_Top 500 | GO:0008234 | 7.96227E-07 | 15 | 121 | cysteine-type peptidase activity, molecular_function |
M2_Top 500 | PF00067 | 9.31946E-07 | 16 | 146 | Cytochrome P450 |
M3_Top500 | GO:0055114 | 1.54695E-07 | 51 | 1078 | oxidation-reduction process, biological_process |
M3_Top500 | PF00067 | 4.50598E-05 | 14 | 146 | Cytochrome P450 |
M3_Top500 | PF00135 | 4.50598E-05 | 12 | 100 | Carboxylesterase family |
M4_fuzzycluster | GO:0055085 | 1.64321E-13 | 137 | 572 | transmembrane transport, biological_process |
M4_fuzzycluster | GO:0016021 | 1.03943E-10 | 122 | 543 | integral component of membrane, cellular_component |
M4_fuzzycluster | PF12796 | 2.91941E-05 | 83 | 387 | Ankyrin repeats (3 copies) |
M4_fuzzycluster | GO:0008061 | 4.19023E-05 | 29 | 85 | chitin binding, molecular_function |
M4_fuzzycluster | GO:0016020 | 5.10354E-05 | 95 | 517 | membrane, cellular_component |
M4_fuzzycluster | PF00083 | 0.000120073 | 36 | 117 | Sugar (and other) transporter |
M4_fuzzycluster | GO:0005515 | 0.000164315 | 307 | 2221 | protein binding, molecular_function |
M4_fuzzycluster | GO:0006468 | 0.000464805 | 57 | 282 | protein phosphorylation, biological_process |