Table 1 Quality of clean reads
Sample | Raw_Reads | Raw_Bases (Gb) | Valid_Reads | Valid_Bases (Gb) | Valid% | Q20% | Q30% | GC% |
|---|---|---|---|---|---|---|---|---|
Tissue1 | 8.1E+ 07 | 12.22 | 7.9E+ 07 | 11.44 | 97.46 | 96.99 | 92.39 | 44.93 |
Tissue2 | 6.8E+ 07 | 10.23 | 6.7E+ 07 | 9.79 | 98.25 | 98.02 | 94.76 | 44.83 |
Tissue3 | 8E+ 07 | 12.02 | 7.8E+ 07 | 11.33 | 97.76 | 97.30 | 93.03 | 45.13 |
Calli_1 | 7.4E+ 07 | 11.12 | 7.2E+ 07 | 10.36 | 97.41 | 96.76 | 91.80 | 46.46 |
Calli_2 | 8.6E+ 07 | 12.89 | 8.3E+ 07 | 11.93 | 96.93 | 96.66 | 91.62 | 45.73 |
Calli_3 | 8.4E+ 07 | 12.56 | 8.2E+ 07 | 11.84 | 97.74 | 97.33 | 93.01 | 46.27 |