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Table 2 Significantly over-represented binding motifs in the promoter region of transcripts showing a similar expression pattern

From: A transcriptional landscape of 28 porcine tissues obtained by super deepSAGE sequencing

Gene cluster

Jaspar ID

TF name

Occurrence

Gene count

Raw score

FDR

Class 1

MA0056.1

MZF1

291

291

91.6

0

Class 1

MA0810.1

TFAP2A(var.2)

165

165

33.1

0.002

Class 1

MA0524.2

TFAP2C

149

149

32.3

0.003

Class 1

MA0811.1

TFAP2B

143

143

29.1

0.004

Class 1

MA0507.1

POU2F2

53

53

8.35

0.006

Class 2

MA0719.1

RHOXF1

142

142

6.96

0.008

Class 3

MA1105.1

GRHL2

28

28

6.99

0.003

Class 3

MA0842.1

NRL

60

60

3.67

0.006

Class 3

MA0164.1

Nr2e3

52

52

2.42

0.003

Class 3

MA0029.1

Mecom

23

23

2.25

0.009

Class 3

MA0117.2

Mafb

49

49

1.69

0.004

Class 4

MA0691.1

TFAP4

20

20

4.93

0.004

Class 4

MA0091.1

TAL1::TCF3

16

16

2.43

0.006

Class 4

MA0616.1

Hes2

19

19

0.8

0.003

Class 4

MA0089.1

MAFG::NFE2L1

21

21

−1.09

0.005

Class 5

MA0002.2

RUNX1

135

135

55.5

0

Class 5

MA1100.1

ASCL1

79

79

46.8

0.008

Class 5

MA0499.1

Myod1

59

59

31.6

0.003

Class 5

MA1124.1

ZNF24

30

30

18.6

0.002

Class 5

MA1109.1

NEUROD1

57

57

9.76

0.004

Class 6

MA0745.1

SNAI2

75

75

18.7

0.001

Class 6

MA0820.1

FIGLA

77

77

17.6

0.003

Class 6

MA0138.2

REST

6

6

7.13

0.002

Class 6

MA0665.1

MSC

36

36

6.63

0.002

Class 6

MA0691.1

TFAP4

30

30

5.79

0.003

Class 7

MA0160.1

NR4A2

59

59

15.5

0

Class 7

MA0693.2

VDR

31

31

4.29

0.004

Class 7

MA0017.2

NR2F1

27

27

4.12

0.009

Class 7

MA1142.1

FOSL1::JUND

38

38

3.25

0.001

Class 7

MA0059.1

MAX::MYC

16

16

1.48

0.008

Class 8

MA0103.3

ZEB1

21

21

10.9

0.002

Class 9

MA0084.1

SRY

22

22

9.59

0.01

Class 9

MA0130.1

ZNF354C

35

35

9.47

0.007

Class 9

MA0463.1

Bcl6

21

21

7.12

0.007

Class 9

MA0799.1

RFX4

7

7

5.64

0.007

Class 9

MA0798.1

RFX3

7

7

5.38

0.009

Class 10

MA0816.1

Ascl2

66

66

28.6

0.009

Class 10

MA0500.1

Myog

58

58

28.5

0.01

Class 10

MA0521.1

Tcf12

57

57

27.2

0.008

Class 10

MA0665.1

MSC

36

36

9.17

0.002

Class 10

MA0108.2

TBP

57

57

4.39

0.007